| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,200,197 | C→A | 100% | D204Y (GAT→TAT) | intE ← | e14 prophage; putative integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,200,197 | 0 | C | A | 100.0% | 414.8 / NA | 111 | D204Y (GAT→TAT) | intE | e14 prophage; putative integrase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (57/54); total (57/54) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 112 total aligned reads displayed.
CTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGC > NC_000913/1200052‑1200340 | cTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGaa < 3:838105/149‑1 (MQ=255) tcacGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAg > 3:614667/4‑149 (MQ=255) tCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAg > 2:30451/1‑149 (MQ=255) cccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATagaaga < 1:843023/149‑1 (MQ=255) ccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAt > 4:370737/1‑149 (MQ=255) ccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAt > 4:338132/1‑149 (MQ=255) ccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAt > 1:672509/1‑149 (MQ=255) cGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAtt < 4:901313/149‑1 (MQ=255) tCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAttttt < 4:435562/149‑1 (MQ=255) ttttCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAttttttt < 3:738894/149‑1 (MQ=255) cTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAtt < 1:72996/149‑1 (MQ=255) tGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 2:693031/149‑1 (MQ=255) aTGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttcttc < 1:18645/149‑1 (MQ=255) aTGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttcttc > 2:540226/1‑149 (MQ=255) aCATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAg < 1:487470/149‑1 (MQ=255) cATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAgg < 2:826985/149‑1 (MQ=255) tGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCt > 4:745555/1‑149 (MQ=255) gAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTc < 4:232598/149‑1 (MQ=255) aGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAg > 2:511379/1‑149 (MQ=255) cccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCgg < 3:499962/149‑1 (MQ=255) ccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCggg > 3:693453/1‑149 (MQ=255) ccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCggg > 1:437180/1‑149 (MQ=255) cAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 3:921384/1‑125 (MQ=255) aaaTATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTa > 4:831964/1‑149 (MQ=255) cGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAAttttt < 3:475579/149‑1 (MQ=255) gCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttc > 3:655957/1‑149 (MQ=255) gCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttc > 2:125708/1‑149 (MQ=255) gCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttc < 2:437180/149‑1 (MQ=255) cTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttct < 3:847436/149‑1 (MQ=255) cTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttct > 4:382436/1‑149 (MQ=255) aTTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTcttctt < 1:211019/149‑1 (MQ=255) tttCATACGCGAAATATCACTTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTg < 3:760382/149‑1 (MQ=255) tttCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTg > 3:40005/1‑149 (MQ=255) gcgAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 3:579845/1‑103 (MQ=255) gcgAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 4:579845/103‑1 (MQ=255) cgAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAg < 1:522957/149‑1 (MQ=255) gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGgttgt < 3:444205/144‑1 (MQ=255) gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGgttgt > 4:444205/1‑144 (MQ=255) gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTa > 3:694594/1‑147 (MQ=255) gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTa < 4:694594/147‑1 (MQ=255) gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGt < 1:209217/149‑1 (MQ=255) tatCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCt > 3:183630/1‑149 (MQ=255) atCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTa > 3:894179/1‑149 (MQ=255) tCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTGCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTaa < 3:587631/149‑1 (MQ=255) aCCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATg > 3:548947/1‑149 (MQ=255) tAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg < 3:757243/139‑1 (MQ=255) tAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg > 4:757243/1‑139 (MQ=255) tAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTg > 4:853858/1‑149 (MQ=255) aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 3:294734/149‑1 (MQ=255) aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 1:283127/149‑1 (MQ=255) aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 1:474052/149‑1 (MQ=255) aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 1:540226/149‑1 (MQ=255) aCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTggg > 4:34998/1‑149 (MQ=255) aCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTggg < 1:117895/149‑1 (MQ=255) gCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGTAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTta < 4:548947/149‑1 (MQ=255) gCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTACGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTta > 1:389573/1‑149 (MQ=255) ccAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGcc < 3:622329/149‑1 (MQ=255) cAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCa > 4:112292/1‑149 (MQ=255) aGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTc < 4:213559/73‑1 (MQ=255) aGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCag < 3:40040/149‑1 (MQ=255) gTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 2:872438/1‑77 (MQ=255) gTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 1:872438/77‑1 (MQ=255) tAACCAGCGCTAAAAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCagga < 4:45207/149‑1 (MQ=255) aaCCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCaggag < 2:672509/149‑1 (MQ=255) ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg < 2:884142/122‑1 (MQ=255) ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg > 1:884142/1‑122 (MQ=255) ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATCGCCAGCAGGt > 4:248583/1‑149 (MQ=255) ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGt > 3:138160/1‑149 (MQ=255) cAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa < 3:71490/149‑1 (MQ=255) aGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc < 3:745555/149‑1 (MQ=255) aGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTACGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc < 2:389573/149‑1 (MQ=255) tAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTtctc > 1:581219/1‑149 (MQ=255) aaCAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTcc < 2:138425/149‑1 (MQ=255) aCAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCg > 4:764520/1‑149 (MQ=255) aGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTa < 1:223571/149‑1 (MQ=255) cATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGt < 4:614667/149‑1 (MQ=255) aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCt > 3:288686/1‑117 (MQ=255) aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCt < 4:288686/117‑1 (MQ=255) aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGtg > 3:894165/1‑149 (MQ=255) aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGtg > 3:452584/1‑149 (MQ=255) gCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa > 4:406049/1‑133 (MQ=255) gCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa < 3:406049/133‑1 (MQ=255) gCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGtgctg > 1:703454/1‑149 (MQ=255) tttCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTgcgc > 2:920301/1‑149 (MQ=255) tCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCct < 3:445276/149‑1 (MQ=255) cccATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 3:855629/1‑50 (MQ=255) cccATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 4:855629/50‑1 (MQ=255) cATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCtt > 4:236320/1‑149 (MQ=255) aTGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCttt > 1:428514/1‑149 (MQ=255) gTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGa < 1:511379/149‑1 (MQ=255) tAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGaa > 2:543536/1‑149 (MQ=255) tAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGaa > 1:887596/1‑149 (MQ=255) aTGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc > 3:843757/1‑117 (MQ=255) aTGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc < 4:843757/117‑1 (MQ=255) aTGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACat > 2:288738/1‑149 (MQ=255) tAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCGAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTg < 2:863099/137‑1 (MQ=255) tAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCGAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTg > 1:863099/1‑137 (MQ=255) aGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACatcaatca < 3:740344/149‑1 (MQ=255) gTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGa < 3:338132/149‑1 (MQ=255) gATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGc < 3:142488/149‑1 (MQ=255) | CTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGC > NC_000913/1200052‑1200340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |