| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 317,143 | C→A | 20.9% | pseudogene (27/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 317,143 | 0 | C | A | 20.9% | 327.1 / 65.9 | 119 | pseudogene (27/684 nt) | ykgA | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| Reads supporting (aligned to +/- strand): ref base C (45/49); new base A (11/14); total (56/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 121 total aligned reads displayed.
CATGCATGAAATTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGA > NC_000913/316995‑317291 | catgcatgAAATTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATtc < 4:781553/149‑1 (MQ=255) tgAAATTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGtt > 4:708812/1‑149 (MQ=255) aaaTTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTaa < 1:431752/149‑1 (MQ=255) aaTTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAAt > 4:657697/1‑149 (MQ=255) aTTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCGTTCTCCGTTAAtt < 1:389892/149‑1 (MQ=255) aTTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAAtt > 4:750333/1‑149 (MQ=255) ttCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCt < 3:57914/149‑1 (MQ=255) tCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCtt < 2:377699/149‑1 (MQ=255) cGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCttt < 1:701355/149‑1 (MQ=255) cGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCttt < 4:584286/149‑1 (MQ=255) cGGAAAAGAAGCTGGATGTTGCGGCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCttt < 4:34397/149‑1 (MQ=255) aaCAGAAGCTGAATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTc > 2:150259/1‑149 (MQ=255) aCAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCa < 3:708812/149‑1 (MQ=255) aCAGAAGCTGAATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCa < 1:150259/149‑1 (MQ=255) aGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCata < 1:432584/149‑1 (MQ=255) aaGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATc < 4:677649/149‑1 (MQ=255) aaGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGCGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATc < 2:36450/149‑1 (MQ=255) gCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGc < 2:663837/149‑1 (MQ=255) cTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGca < 2:21637/149‑1 (MQ=255) gATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACAt < 4:360980/149‑1 (MQ=255) gTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACAtttt > 4:563339/1‑149 (MQ=255) tCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTtat < 3:657697/149‑1 (MQ=255) tCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTtat < 1:113280/149‑1 (MQ=255) ctgTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACAt < 3:268911/136‑1 (MQ=255) gcgaGATTTCTGTGCGATATCTTCGGTTGAAATAGGGTGCTCAAGATTGCAGTCACTCCACTCCAGGAGCTTCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGc > 4:575114/4‑149 (MQ=255) gCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTc < 1:699394/135‑1 (MQ=255) gCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTc > 2:699394/1‑135 (MQ=255) cAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAAt > 1:74361/1‑110 (MQ=255) cAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAAt < 2:74361/110‑1 (MQ=255) aTTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTaa > 2:94013/1‑149 (MQ=255) tttCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGt < 2:525125/113‑1 (MQ=255) tttCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGt > 1:525125/1‑113 (MQ=255) tCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAgtg < 4:44522/149‑1 (MQ=255) tgtgCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTa > 4:426381/1‑149 (MQ=255) tgtgCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTa > 3:106501/1‑149 (MQ=255) gCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCa > 4:551336/1‑149 (MQ=255) cGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTACCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCaa < 2:890931/149‑1 (MQ=255) gATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCaaa < 2:741671/149‑1 (MQ=255) atCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAAt < 4:814773/149‑1 (MQ=255) tCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATa < 1:680106/149‑1 (MQ=255) ttCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTGCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGt < 2:511789/98‑1 (MQ=255) ttCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTGCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGt > 1:511789/1‑98 (MQ=255) ttCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGc > 3:261370/1‑149 (MQ=255) gATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAg < 2:795161/149‑1 (MQ=255) aTTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAgg > 4:36103/1‑149 (MQ=255) aTTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAgg > 2:17207/1‑149 (MQ=255) tGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGc < 1:400358/149‑1 (MQ=255) gAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCg < 1:391357/149‑1 (MQ=255) aaTAGGGTGCTCAAGATTGCACTCAATCCACTCCACGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATCTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGaa < 3:632470/149‑1 (MQ=255) aTAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAg < 3:66192/149‑1 (MQ=255) tGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCaaaa < 2:701592/149‑1 (MQ=255) tGCTCAAGAGTGCACTCAATCCAATCCACGAGCTGCTGTAGAATCTTCTTCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCGAAAATAGCAAGGGCGAAGGCaaaa < 3:780733/149‑1 (MQ=255) gCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAg < 2:393257/149‑1 (MQ=255) tCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCa > 2:314020/1‑149 (MQ=255) tCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCa > 1:78117/1‑149 (MQ=255) aaGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACt < 3:472960/149‑1 (MQ=255) gATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTgg > 1:177102/1‑149 (MQ=255) aTTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACt > 4:440606/1‑146 (MQ=255) aTTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACt < 3:440606/146‑1 (MQ=255) aCTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCAc > 4:213357/1‑140 (MQ=255) cTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTaa > 2:568725/1‑60 (MQ=255) cTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTaa < 1:568725/60‑1 (MQ=255) tCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCt > 4:208059/1‑149 (MQ=255) aaTCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGc < 1:577672/149‑1 (MQ=255) aCTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGt > 3:617253/1‑149 (MQ=255) cAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTc > 2:718463/1‑149 (MQ=255) cAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTc < 1:143583/149‑1 (MQ=255) aGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTcc < 3:467223/149‑1 (MQ=255) tgctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTACTTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGaaa > 4:535567/1‑149 (MQ=255) ctgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAAt > 4:622807/1‑149 (MQ=255) tgTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATa < 4:106501/149‑1 (MQ=255) gTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATag > 2:140766/1‑149 (MQ=255) tAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATaga < 3:750333/149‑1 (MQ=255) tAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATaga < 1:94013/149‑1 (MQ=255) tAGAATCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATaga < 2:623803/149‑1 (MQ=255) aaTCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagagag > 4:303980/1‑149 (MQ=255) aaTCTTCTGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCGTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagagag < 2:786261/149‑1 (MQ=255) aaTCTTCTGCCTGATCATCTCATTATCCGTTAATTCGTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATagagag > 2:871623/1‑149 (MQ=255) tcttctGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGt > 1:767293/1‑149 (MQ=255) tcttctGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGt > 2:486713/1‑149 (MQ=255) cttcttCCTGATCATCTCAATCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGtt < 1:792098/149‑1 (MQ=255) ctGCCTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCa < 1:898574/149‑1 (MQ=255) gCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGt > 1:145132/1‑149 (MQ=255) cTGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTcc > 4:162548/1‑149 (MQ=255) tGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTCCAGTCCt > 3:373891/1‑149 (MQ=255) tGATCATCTCATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCt > 4:465622/1‑149 (MQ=255) atcatcTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTAc > 3:82223/1‑149 (MQ=255) tctcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAg < 3:435650/92‑1 (MQ=255) tctcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAg > 4:435650/1‑92 (MQ=255) tctcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACatta > 1:592403/1‑149 (MQ=255) ctcATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTTTACCCTGGGCCCTAAGTGTATCAAAAATa < 2:480702/72‑1 (MQ=255) ctcATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTTTACCCTGGGCCCTAAGTGTATCAAAAATa > 1:480702/1‑72 (MQ=255) tcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTccc > 3:821478/1‑117 (MQ=255) tcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTccc < 4:821478/117‑1 (MQ=255) tcATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACattatt > 1:621928/1‑149 (MQ=255) tcATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGc > 4:493832/1‑85 (MQ=255) tcATTATCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGc < 3:493832/85‑1 (MQ=255) ttCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGaa < 3:201128/79‑1 (MQ=255) ttCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGaa > 4:201128/1‑79 (MQ=255) ctcCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGa < 3:551336/149‑1 (MQ=255) | CATGCATGAAATTTCGGAACAGAAGCTGGATGTTGCGTCTGCTGTAGCCAGATTTCTGTGCGATATCTTCGATTGAAATAGGGTGCTCAAGATTGCACTCAATCCACTCCAGGAGCTGCTGTAGAATCTTCTGCCTGATCATCTCATTCTCCGTTAATTCTTTGTCATATCGCACATTTTCGTTATACCCTGGGCCCTAAGTGTATCAAAAATAGCAAGGGCGAAGGCAAAAGCACTGGTAGCGTCTGCTTCGTTGTCCCCGAAAATAGAGAGGTTTCAGTCCTACATTATTAATGA > NC_000913/316995‑317291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |