Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,420,183 | A→G | 6.6% | R101R (CGT→CGC) | yfcF ← | glutathione S‑transferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,420,183 | 0 | A | G | 6.6% | 196.7 / 4.2 | 61 | R101R (CGT→CGC) | yfcF | glutathione S‑transferase |
Reads supporting (aligned to +/- strand): ref base A (29/28); new base G (2/2); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.37e-01 |
GCCATCGCGAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGACCGTAAC > NC_000913/2420040‑2420331 | gCCATCGCGAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACgcgc > 3:461641/1‑149 (MQ=255) ccATCGCGAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGAAGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCa > 2:222047/1‑149 (MQ=255) tCGCGAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGa > 4:256342/1‑149 (MQ=255) tCGCGAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGa < 3:510820/149‑1 (MQ=255) cgcgAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCGCGTGCACGac < 3:187273/149‑2 (MQ=255) gcgAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGAtt < 2:180233/149‑1 (MQ=255) aaCAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTc < 1:197200/149‑1 (MQ=255) aGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTaa > 3:169971/1‑149 (MQ=255) tttCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAAt > 1:206800/1‑149 (MQ=255) tGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGGCGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGATTCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATaa > 1:238919/1‑149 (MQ=255) tGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCGTCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATaa > 3:243452/1‑149 (MQ=255) tGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCGTCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATaa > 3:611467/1‑149 (MQ=255) cTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATa < 3:256342/149‑1 (MQ=255) ttttCCATAGGGCGTTAGTGGCGCATTTTTTGACCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGAGCATCAGTCCGCTGCGCCGCCAGGCCTGCATCTGTCGTGCACGCGCACGATTTTCTAAATCATGAGGATAAAtcc > 2:75525/1‑147 (MQ=255) cccTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTc > 3:330994/1‑149 (MQ=255) tCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCa < 4:538252/149‑1 (MQ=255) tCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCa < 1:257424/149‑1 (MQ=255) ccGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAg > 2:23825/1‑127 (MQ=255) ccGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAg < 1:23825/127‑1 (MQ=255) gTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCAc < 2:163621/103‑1 (MQ=255) gTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCAc > 1:163621/1‑103 (MQ=255) gcgcTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCa > 1:610328/1‑149 (MQ=255) ttttttCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATc > 1:414921/1‑149 (MQ=255) ttttttCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATc < 1:316254/149‑1 (MQ=255) ttttttCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATc > 2:540473/1‑149 (MQ=255) tttCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGAt < 2:210489/149‑1 (MQ=255) gCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTc < 3:584668/149‑1 (MQ=255) ccccGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCa > 1:98794/1‑149 (MQ=255) ccGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGa < 3:368582/149‑1 (MQ=255) gACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCg > 2:567662/1‑149 (MQ=255) aacaTCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCaa < 3:239241/149‑1 (MQ=255) aacaTCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCaa > 1:133111/1‑149 (MQ=255) aTCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATgg > 2:522978/1‑149 (MQ=255) ccGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCa < 2:441339/149‑1 (MQ=255) tCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCagaa < 2:610328/149‑1 (MQ=255) aCGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAAt > 3:297357/1‑90 (MQ=255) aCGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAAt < 4:297357/90‑1 (MQ=255) tctTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCact > 1:107024/1‑149 (MQ=255) ggATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGAtt > 4:264100/1‑138 (MQ=255) ggATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGAtt < 3:264100/138‑1 (MQ=255) tGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCaaaa < 1:64017/149‑1 (MQ=255) aTCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAatcatc < 2:182494/149‑1 (MQ=255) gATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGAtt < 4:330994/149‑1 (MQ=255) gATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGAtt > 4:485119/1‑149 (MQ=255) gATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATAGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGAtt > 2:459254/1‑149 (MQ=255) aTCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGAttt < 2:452724/149‑1 (MQ=255) gCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGta > 2:370723/1‑149 (MQ=255) cTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGtaa < 1:540473/149‑1 (MQ=255) gcgcAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGtaata > 4:164807/1‑149 (MQ=255) aGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACgg < 2:600829/149‑1 (MQ=255) gCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGc < 1:522978/149‑1 (MQ=255) cAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGcac > 2:615843/1‑149 (MQ=255) ccTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACgg > 4:49570/1‑149 (MQ=255) aTCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCgtgt < 2:206800/149‑1 (MQ=255) aaaatCGTGCGCGTGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTc > 2:57377/5‑149 (MQ=255) aatCGTGCGCGTGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGcaca > 4:164863/3‑138 (MQ=255) aatCGTGCGCGTGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGcaca < 3:164863/136‑1 (MQ=255) gTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGa < 1:459254/149‑1 (MQ=255) gTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGa < 3:273317/149‑1 (MQ=255) gTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGa > 4:80858/1‑149 (MQ=255) cGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGAcc < 2:238919/149‑1 (MQ=255) aCGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGACCGTAAc < 2:107024/149‑1 (MQ=255) | GCCATCGCGAACAGTTTCTCTGCACTGGCTTTTCCCTCGGCCGTTAGTGGCGCTTTTTTCGCCCCCGCAAAGACAACATCCGTCGGACGCTCTTCGCGGATGGGCATCAGATCGCTGCGCAGCCAGGCCTGAATCTGTCGTGCACGCGCACGATTTTCTAAATCAAGCGGATAAATACGTTCCCAGGTCGGTGGCGCAAATCGATCTTCCAGATACTCCGCAATGGCAGAAGATTCACTCAACTCAAAATCATCGATTTGTAATAACGGCACACGGCGTGTCTGACCGTAAC > NC_000913/2420040‑2420331 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |