| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1657831 = | 131 (0.700) | 8 (0.040) | 8/230 | NT | 5.9% | coding (267/306 nt) | ynfD | DUF1161 family periplasmic protein |
| ? | NC_000913 | 1657858 = | NA (NA) | coding (294/306 nt) | ynfD | DUF1161 family periplasmic protein | |||||
GTTAAGAATTATTAATCCATATCAATAGAAGGGTATGAGTAATAAGGTGGGATTATGTTGTATGTTCAAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1657980‑1657831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgc‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATT > NC_000913/1657858‑1658005 GTTAAGAATTATTAATCCATATCAATAGAAGGGTATGAGTAATAAGGTGGGATTATGTTGTATGTTCAAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTG > 2:1687415/1‑149 TTAAGAATTATTAATCCATATCAATAGAAGGGTATGAGTAATAAGGTGGGATTATGTTGTATGTTCGAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATCTCTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTGC > 4:1229851/1‑149 TTAAGAATTATTAATCCATATCAATAGAAGGGTATGAGTAATAAGGTGGGATTATGTTGTATGTTCAAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTGC > 3:482596/1‑149 TTGTATGTTCAAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTG < 4:469764/92‑1 TTGTATGTTCAAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTG > 3:469764/1‑92 TCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACT < 4:432879/66‑1 TCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACT > 3:432879/1‑66 TTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTGC‑GCGGGAGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGAT > 2:451475/1‑149 TTCGGCAGGCGCGCCATCCTGGCTAGACTGC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCT > 3:449083/1‑128 TTCGGCAGGCGCGCCATCCTGGCTAGACTGC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCT < 4:449083/128‑1 GGCAGGCGCGCCATCCTGGCTAGACTGCGCG‑GGAGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTA < 1:451475/149‑1 GCAGGCGCGCCATCCTGGCTAGACTGC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCAC > 3:410076/1‑104 GCAGGCGCGCCATCCTGGCTAGACTGC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCAC < 4:410076/104‑1 GGCGCGCCATCCTGGCTAGACTGC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAA < 3:1631234/146‑1 GGCGCGCCATCCTGGCTAGACTGC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAA > 4:1631234/1‑146 GC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGAT < 1:183190/56‑1 GC‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGAT > 2:183190/1‑56 C‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATT < 3:763846/149‑1 C‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATT < 1:842857/149‑1 GTTAAGAATTATTAATCCATATCAATAGAAGGGTATGAGTAATAAGGTGGGATTATGTTGTATGTTCAAATCGCCGGATTTGTCATATCCGGCGTTCAGTCGATAATGTGTTACTGCGGTTCGGCAGGCGCGCCATCCTGGCTAGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1657980‑1657831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgc‑CGAACCGCAGTAACACATTATCGACTGAACGCCGGATATGACAAATCCGGCGATTTGAACATACAACATAATCCCACCTTATTACTCATACCCTTCTATTGATATGGATTAATAATTCTTAACCCAAAATGGGTAGACTCCCTCTATT > NC_000913/1657858‑1658005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |