New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3470960	NA (NA)	6 (0.030)	4/226	NT	NA	coding (370/1185 nt)	tufA	translation elongation factor EF‑Tu 1
	?	NC_000913	= 3470998	NA (NA)					coding (332/1185 nt)	tufA	translation elongation factor EF‑Tu 1

AGAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3470808‑3470960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacgGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCTCA  <  NC_000913/3470998‑3470851                                                                                                                                                                                                                                                                                                               AGAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCT                                                                                                                                                          >  4:1149507/1‑149  GAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTG                                                                                                                                                         >  2:240823/1‑149  GAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTG                                                                                                                                                         >  4:104671/1‑149  GAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTG                                                                                                                                                         <  3:932471/149‑1  GAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTG                                                                                                                                                         >  2:88051/1‑149   AACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        <  4:1844887/149‑1    ACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCATCCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGAC                                                                                                                                                       <  1:1352467/149‑1    ACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGAC                                                                                                                                                       <  1:1686919/149‑1    ACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGAC                                                                                                                                                       <  4:1414278/149‑1    ACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGAC                                                                                                                                                       <  4:1773107/149‑1                              CCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        >  1:813085/1‑122                              CCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        <  2:813085/122‑1                                           CTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        >  2:1731770/1‑109                                           CTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        <  1:1731770/109‑1                                                 CAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAG                                                                                                          >  4:1056167/1‑149                                                    AAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTA                                                                                                       <  2:918305/149‑1                                                    AAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTA                                                                                                       >  1:918305/1‑149                                                    AAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTA                                                                                                       <  2:1710459/149‑1                                                    AAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTA                                                                                                       >  1:1710459/1‑149                                                     AGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAG                                                                                                      <  3:1056167/149‑1                                                                              GTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        >  2:1576975/1‑74                                                                              GTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGA                                                                                                                                                        <  1:1576975/74‑1                                                                                                                                                    CTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTG       <  2:512342/149‑1                                                                                                                                                    CTGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCca       <  1:1382837/149‑3                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAACTGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcat      <  2:1740159/149‑4                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGT      <  2:483686/149‑1                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGT      <  4:621306/149‑1                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGT      >  3:522114/1‑149                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGT      <  4:1535548/149‑1                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGT      <  3:1226174/149‑1                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGT      >  4:234814/1‑149                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCT        <  2:1770828/147‑1                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCT        >  1:1770828/1‑147                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcat      <  3:1781379/149‑4                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcat      <  2:803409/149‑4                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcat      <  2:626299/149‑4                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcat      <  4:1018749/149‑4                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcat      <  1:1763720/149‑4                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGC                                          >  1:417423/1‑113                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGC                                          <  2:417423/113‑1                                                                                                                                                     TGACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGAGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGATGCTGGAACTGGGTGAAATGGAAGTTCGTGAACTTCTGT      >  3:1592679/1‑149                                                                                                                                                      GACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTC     <  1:912701/149‑1                                                                                                                                                      GACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTC     <  1:1840257/149‑1                                                                                                                                                      GACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCACGAACTTCcatt     <  2:995190/149‑5                                                                                                                                                       ACGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCT    <  1:1345633/149‑1                                                                                                                                                        CGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCTC   <  3:401255/149‑1                                                                                                                                                        CGGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCTC   <  1:478947/149‑1                                                                                                                                                         GGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCTCA  <  1:429061/149‑1                                                                                                                                                         GGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCTCA  >  1:1305051/1‑149                                                                                                                                                         GGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAA                           >  3:999485/1‑124                                                                                                                                                         GGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAA                           <  4:999485/124‑1                                                                                                                                                         GGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGA                                                                 >  3:445841/1‑86                                                                                                                                                         GGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGA                                                                 <  4:445841/86‑1                                                                                                                                                                                                                                                                                                               AGAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGTCGTACTGAGACAGAAGTTCACGAACTTCCATTTCAACCAGTTCCAGCAGCTCTTCGTCATCAACCATGTCGCATTTGTTCAGGAACACGATGATGTACGGAACGCCTACCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3470808‑3470960 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacgGCCCGATGCCGCAGACTCGTGAGCACATCCTGCTGGGTCGTCAGGTAGGCGTTCCGTACATCATCGTGTTCCTGAACAAATGCGACATGGTTGATGACGAAGAGCTGCTGGAACTGGTTGAAATGGAAGTTCGTGAACTTCTGTCTCA  <  NC_000913/3470998‑3470851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.