New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3736232 =	369 (2.070)	22 (0.120)	13/228	NT	5.6%	noncoding (79/171 nt)	REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	= 4484414	NA (NA)					noncoding (82/84 nt)	REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences

AACGGTTAATCGCGGCGCATATGTAATTGCATTTCCTTGAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3736378‑3736232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACGTT  <  NC_000913/4484414‑4484264                                                                                                                                                                                                                                                                                                            AACGGTTAATCGCGGCGCATATGTAATTGCATTTCCTTGAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCG                                                                                                                                                       <  2:1538696/149‑1  ACGGTTAATCGCGGCGCATATGTAATTGCATTTCCTTGAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGG                                                                                                                                                      >  4:622426/1‑149                          ATTGCATTTCCTTGAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGA                                                                                                                              >  2:891611/1‑149                           TTGCATTTCCTTGAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAC                                                                                                                             <  1:891611/149‑1                                            TTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  >  3:521297/1‑127                                            TTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  <  4:521297/127‑1                                                 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCTTGAAGCGTTTTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTC                                                                                                                                                        <  4:89525/100‑1                                                 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTC                                                                                                                                                        >  3:89525/1‑100                                                  GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCG                                                                                                                                                       <  1:961753/100‑1                                                  GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCG                                                                                                                                                       >  2:961753/1‑100                                                  GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTC                                                                                                                                                        <  4:1751124/99‑1                                                  GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTC                                                                                                                                                        >  3:1751124/1‑99                                                    CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  <  4:1799334/119‑1                                                    CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  >  3:1799334/1‑119                                                     TTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTC                                                                                                                                                        >  2:402438/1‑96                                                     TTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTC                                                                                                                                                        <  1:402438/96‑1                                                                    GGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  <  4:739119/103‑1                                                                    GGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  >  3:739119/1‑103                                                                       TTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAC                                                                                                                             >  1:1069694/1‑105                                                                       TTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAC                                                                                                                             <  2:1069694/105‑1                                                                       TTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  >  4:1486983/1‑100                                                                       TTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  <  3:1486983/100‑1                                                                       TTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  >  2:129471/1‑100                                                                       TTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  <  1:129471/100‑1                                                                             CTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGA                                                                                                                              <  1:470789/98‑1                                                                             CTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGA                                                                                                                              >  2:470789/1‑98                                                                              TTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATC                                                                                                                                 >  2:799937/1‑94                                                                              TTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATC                                                                                                                                 <  1:799937/94‑1                                                                                    TCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  >  3:553846/1‑87                                                                                    TCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTAT                                                                                                                                  <  4:553846/87‑1                                                                                        GCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTCG                                                                                                                                                       >  4:1598100/1‑62                                                                                        GCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTATTATCATGCCTGGCGGGTAGGTCG                                                                                                                                                       <  3:1598100/62‑1                                                                                          AGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCGTGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAC                                                                                                                             >  4:1708520/1‑86                                                                                          AGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCGTGCCTGGCGGGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAC                                                                                                                             <  3:1708520/86‑1                                                                                                                                                  GTCGGATAAGGCGTTCACGCCGCATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATT                    <  1:82735/135‑1                                                                                                                                                  GTCGGATAAGGCGTTCACGCCGCATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATT                    >  2:82735/1‑135                                                                                                                                                   TCGGATAAGGCGTTCACGCCGCATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATG                >  3:1008503/1‑138                                                                                                                                                   TCGGATAAGGCGTTCACGCCGCATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATG                <  4:1008503/138‑1                                                                                                                                                   TCGGATAAGGCGTTCACGCCGCATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATG                <  1:656918/138‑1                                                                                                                                                    CGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACG    >  1:886728/1‑149                                                                                                                                                    CGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACG    >  2:1589972/1‑149                                                                                                                                                     GGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACGT   <  4:1418930/149‑1                                                                                                                                                      GATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACGTT  <  4:400151/149‑1                                                                                                                                                      GATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACGTT  <  2:1839179/149‑1                                                                                                                                                                                                                                                                                                            AACGGTTAATCGCGGCGCATATGTAATTGCATTTCCTTGAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGTGCGTTTTATCATGCCTGGCGGGTAGGTcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3736378‑3736232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCGCTGCGGTGTATACCTGATGCGTATTTAAATCCACCACAAGAAGCCCCATTTATGAAAAACGCGACGTT  <  NC_000913/4484414‑4484264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.