| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4389302 = | 185 (0.990) | 9 (0.050) | 8/228 | NT | 5.1% | coding (69/3324 nt) | mscM | mechanosensitive channel protein, miniconductance |
| ? | NC_000913 | 4389328 = | 155 (0.870) | coding (43/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
ATCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGCG‑ACGGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4389388‑4389302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAGCAGGAAGCGGGGCAGGT > NC_000913/4389328‑4389473 ATCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGCCGT‑CGCGGCGTACGCCCCCCAAC > 1:1341298/1‑90ATCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGCCGT‑CGCGGCGTACGCCCCCCAAC > 1:502469/1‑90ATCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGCCGT‑CGCGGCGTACGCCCCCCAAC < 2:502469/90‑1 TCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGCCGT‑CGCGGCGTACGCCCCCCAACTGA < 3:1462512/92‑1 TCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGCCGT‑CGCGGCGTACGCCCCCCAACTGA > 4:1462512/1‑92 CAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGCG‑ACGGCCCCC > 3:1684452/1‑85 CAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGCG‑ACGGCCCCC < 4:1684452/85‑1 AAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGCG‑ACGGCC > 1:363630/1‑81 AAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGCG‑ACGGCC < 2:363630/81‑1 GTTGGGTGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGAT > 2:1341298/1‑90 GGGGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTC > 1:1685174/1‑149 GGGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTT > 4:1059504/1‑104 GGGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTT < 3:1059504/104‑1 GGGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTATTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCT > 3:1252971/1‑149 GGGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGA > 3:424038/1‑93 GGGGCGTACGCCGCG‑ACGGCCCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGA < 4:424038/93‑1 CCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAGCAGGAAGCGGGGCAGG > 2:516436/1‑149 CCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAGCAGGAAGCGGGGCAGG > 4:1127396/1‑149 CCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAGCAGGAAGCGGGGCAGG > 1:1226542/1‑149 CCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAG > 2:290845/1‑133 CCCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAG < 1:290845/133‑1 CCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAGCAGGAAGCGGGGCAGGT > 1:1700214/1‑149 CCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAAC > 3:661209/1‑94 CCCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAAC < 4:661209/94‑1 CCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCT < 2:905606/127‑1 CCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCT > 1:905606/1‑127 CCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGAT < 2:232036/123‑1 CCAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGAT > 1:232036/1‑123 ATCAAAGGAAACGCTGACGTGCGCCTGATTATCACTTTTCTGATGGCCTGGTGCCTCAGTTGGGGGGCGTACGCCGCG‑ACGGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4389388‑4389302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccAACTGAGGCACCAGGCCATCAGAAAAGTGATAATCAGGCGCACGTCAGCGTTTCCTTTGATGGATTAGACCTGGTCTTTTTTGTCGTCAACCAATGGGCTGGCGTCGTGTTCTGCTTCGATCTCTTCAGCAGGAAGCGGGGCAGGT > NC_000913/4389328‑4389473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |