New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4511780 | 185 (0.990) | 4 (0.020) | 4/230 | NT | 2.1% | coding (635/957 nt) | fecD | ferric citrate ABC transporter permease |
? | NC_000913 | = 4511807 | 189 (1.050) | coding (608/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
Rejected: Frequency below/above cutoff threshold. |
ACCGGTGATGCTACGCATCATATGCGGCACCACGAGACCAATAAAGCTAATCGGGCCGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4511629‑4511780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTGCGGCCCGATTAGCTTTATTGGTCTCGT < NC_000913/4511807‑4511660 ACCGGTGATGCTACGCATCATATGCGGCACCACGAGACCAATAAAGCTAATCGGGCCGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGC > 3:1629211/1‑149 ACCACGAGACCAATAAAGCTAATCGGGCCGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGC < 4:231568/121‑1 ACCACGAGACCAATAAAGCTAATCGGGCCGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGC > 3:231568/1‑121 CGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGCGCGATCTCGACCTCCTTGCACTCGGCGATGCGCG > 4:1186014/1‑127 CGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGCGCGATCTCGACCTCCTTGCACTCGGCGATGCGCG < 3:1186014/127‑1 ACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGCGCGATCTCGACCTCCTTGCACTCGGCGATGCGCGC > 1:314272/1‑117 ACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGCGCGATCTCGACCTCCTTGCACTCGGCGATGCGCGC < 2:314272/117‑1 CGCGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTG > 1:951347/1‑125 CGCGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTG < 2:951347/125‑1 CGCGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGT < 4:577345/95‑1 CGCGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGT > 3:577345/1‑95 GCGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCAGGCGGCCac < 2:293268/131‑3 GCGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCAGGCGGCCac > 1:293268/1‑129 CGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTGCGG > 2:24185/1‑126 CGATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTGCGG < 1:24185/126‑1 GATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTGCGGCCCGATTAGCTTTATTGGTCTCGT < 2:1686897/149‑1 GATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTGCGGCCCGATTAGCTTTATTGGTCTCGT < 4:1537702/149‑1 ACCGGTGATGCTACGCATCATATGCGGCACCACGAGACCAATAAAGCTAATCGGGCCGCAGGCGGCCACGCCGGTAGATGTCATGGCGACAGCTAGTAACAAAGCCCAGAATCGGGTATGGGGCACCGACACACCGAGCGTGGTGGCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4511629‑4511780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgATCTCGACCTCCTTGCACTCGGCGATGCGCGCGCCACCACGCTCGGTGTGTCGGTGCCCCATACCCGATTCTGGGCTTTGTTACTAGCTGTCGCCATGACATCTACCGGCGTGGCCGCCTGCGGCCCGATTAGCTTTATTGGTCTCGT < NC_000913/4511807‑4511660 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |