| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4530145 | 296 (1.590) | 13 (0.070) | 10/226 | NT | 4.3% | coding (99/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530173 | 298 (1.680) | coding (71/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4529993‑4530145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctt‑aTCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTGC < NC_000913/4530173‑4530027 CCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGC > 3:886479/1‑149 CGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCC > 1:1181075/1‑149 CGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCC < 2:1808914/149‑1 GAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT > 3:234175/1‑149 AGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑A > 3:797546/1‑149 CCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCC > 2:1522777/1‑149 CAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGC > 4:353598/1‑130 CAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGC < 3:353598/130‑1 CAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGC > 1:63460/1‑149 GGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGC > 1:1155438/1‑149 CTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAG < 4:886479/149‑1 CTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAG < 2:1155438/149‑1 TAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGG < 2:63460/149‑1 TAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGG < 1:1522777/149‑1 TCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAG < 1:1706130/135‑1 TCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAG > 2:1706130/1‑135 ATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCG > 4:676021/1‑122 ATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCG < 3:676021/122‑1 GAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCTTCCGCATCCCCTGGCTGCAGGC > 3:153850/1‑99 GAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCTTCCGCATCCCCTGGCTGCAGGC < 4:153850/99‑1 GCCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCGTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCC > 2:67654/1‑149 CCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCC < 4:136658/113‑1 CCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCC < 4:1673762/113‑1 CCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCC > 3:1673762/1‑113 CCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCC > 3:136658/1‑113 CCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGT > 3:373598/1‑109 CCTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGT < 4:373598/109‑1 CTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCT > 1:512598/1‑149 CTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCC < 3:652306/112‑1 CTT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCC > 4:652306/1‑112 TT‑ATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTG > 2:481224/1‑149 T‑ATCTTCCGCATCCCCTGGCTGCTGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTGC < 4:1316628/149‑1 CCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTT‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4529993‑4530145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctt‑aTCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTGC < NC_000913/4530173‑4530027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |