| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4586784 = | 153 (0.820) | 4 (0.020) | 4/226 | NT | 2.5% | intergenic (‑23/‑165) | hsdR/mrr | endonuclease R Type I restriction enzyme/methylated adenine and cytosine restriction protein |
| ? | NC_000913 | 4586809 = | 169 (0.950) | intergenic (‑48/‑140) | hsdR/mrr | endonuclease R Type I restriction enzyme/methylated adenine and cytosine restriction protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGAATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4586937‑4586784‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcccATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGACGGT > NC_000913/4586809‑4586956 GCAGAATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACA < 2:1458075/149‑1 GAATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGC < 4:628968/149‑1 GAATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGC > 3:1503399/1‑149 ATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGCCC < 4:1037809/149‑1 ATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGCCC < 2:175060/149‑1 TAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACA > 4:766802/1‑138 TAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACA < 3:766802/138‑1 TAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGG > 1:1732966/1‑120 TAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGG < 2:1732966/120‑1 AAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGC > 3:548447/1‑112 AAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGC < 4:548447/112‑1 TTATGGGCCTTAAATATTTGGACAGGCCCATAACATCTTATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGA > 3:1177881/1‑90 TTATGGGCCTTAAATATTTGGACAGGCCCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGA < 4:1177881/90‑1 TTAAATATTTGGACAGGCCCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGAC < 2:394537/63‑1 TTAAATATTTGGACAGGCCCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGAC > 1:394537/1‑63 GCCCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGAC < 3:1238618/149‑1 CCCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGACG > 2:1865817/1‑149 CCCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGACG > 2:1282427/1‑149 CCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGC > 3:1042989/1‑39 CCATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGC < 4:1042989/39‑1 CATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGACGGT > 4:1626444/1‑149 CATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGACGGT > 1:14614/1‑149 CATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTA < 3:1305645/139‑1 CATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTA > 4:1305645/1‑139 GCAGAATCAGGTAGATGTTTTTCGGCTACTATAGCACTACAAAAATAGACGAACACGTTAGAAATGAGTCAGTTGCTGTGACCGTGGTCATTGCCCGGAAAGGTACAGAAAGCTAAGATGAGATGTTATGGGCCTTAAATATTTGGACAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4586937‑4586784‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcccATAACATCTCATCTTAGCTTTCTGTACCTTTCCGGGCAATGACCACGGTCACAGCAACTGACTCATTTCTAACGTGTTCGTCTATTTTTGTAGTGCTATAGTAGCCGAAAAACATCTACCTGATTCTGCAAGGATGTACTATGACGGT > NC_000913/4586809‑4586956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |