| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4636324 = | 194 (1.040) | 8 (0.050) | 7/224 | NT | 4.2% | coding (318/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636375 = | 185 (1.050) | coding (369/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4636478‑4636324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgaaGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGC > NC_000913/4636375‑4636522 ACCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG > 2:67749/1‑149ACCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG > 2:342970/1‑149 CCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGG < 1:1007600/149‑1 CCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGG > 2:1611763/1‑149 CCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGG < 1:43484/149‑1 CCGAGTCAGCGCTAATCGCGTGTCAATCCAGCTGATCTACGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGATCTTCTTCACTCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGG > 3:1178244/1‑149 TCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAA < 3:173529/149‑1 TCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCACTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAA > 1:636125/1‑149 GCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGT < 1:962431/143‑1 GCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGT > 2:962431/1‑143 TCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGG < 4:1201465/127‑1 TCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGG > 3:1201465/1‑127 AAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG > 1:476543/1‑124 AAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG < 2:476543/124‑1 GCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG > 3:1226154/1‑118 TTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG < 1:1713167/96‑1 TTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG > 2:1713167/1‑96 GGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG < 3:253380/67‑1 GGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGG > 4:253380/1‑67 TTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGC > 3:795801/1‑149 TTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAA > 1:897241/1‑100 TTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAA < 2:897241/100‑1 CACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTT > 3:1259750/1‑127 CACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTT < 4:1259750/127‑1 GACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAA > 1:1545920/1‑95 GACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAA < 2:1545920/95‑1 TAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTT < 4:795801/149‑1 GGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCG > 1:448755/1‑149 GGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGG > 4:1241600/1‑149 GGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGG > 2:1183408/1‑149 GTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGG > 3:405014/1‑149 GTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGC > 3:1217315/1‑91 GTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGC < 4:1217315/91‑1 TGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGC < 2:700676/149‑1 AAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAG < 2:1807867/138‑1 AAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAG > 1:1807867/1‑138 AAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTA < 4:992830/132‑1 AAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTA > 3:992830/1‑132 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGC > 2:168020/1‑149 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAA > 4:1033103/1‑136 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAA < 3:1033103/136‑1 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTA < 1:310741/131‑1 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTA > 2:310741/1‑131 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTT > 2:1734777/1‑113 AGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTT < 1:1734777/113‑1 ACCGAGTCAGCGCTAATGGCGTGTCAAACCAGCTGATCTGCGCCGCGGGTTCATTCAATTCAAAATGTCCAATACGGATGACGGGAGACGGCGTCGAGAACTTCTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4636478‑4636324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgaaGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGCGCTGACTCGGTATGAGTTTTTATTGTTGAAGACGTTACTCAAGTCACCGGGCCGC > NC_000913/4636375‑4636522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |