New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3620569 =NA (NA)23 (0.130) 14/226 NT 100% coding (1378/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620582 = 0 (0.000)coding (1391/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

ACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCCGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCA  >  NC_000913/3620435‑3620730
                                                                                                                                                   |                                                                                                                                                    
gtagcgggtgatatcgccgtcaggggcagtttcctgactcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCg                                                                                                                                                     >  4:678254‑M2/148‑149 (MQ=255)
gtagcgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcaacatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCg                                                                                                                                                     >  2:1612791‑M2/148‑149 (MQ=255)
  agcgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcgtattcccggcgcaattccaggccgtcaggcccggtggctgacgttaactggtcgtggtggttatagtaaaacgctgatgccctgccatcCGGc                                                                                                                                                   <  1:548218‑M2/4‑1 (MQ=255)
  agcgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGc                                                                                                                                                   <  1:1192791‑M2/4‑1 (MQ=255)
  agcgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGc                                                                                                                                                   <  3:1513283‑M2/4‑1 (MQ=255)
   gcgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                                                                  >  1:1402595‑M2/145‑149 (MQ=255)
   gcgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                                                                  >  1:653855‑M2/145‑149 (MQ=255)
    cgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 <  2:522192‑M2/6‑1 (MQ=255)
    cgggtgatatcgccgtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 <  3:1235832‑M2/6‑1 (MQ=255)
                  gtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 <  3:52260‑M2/6‑1 (MQ=255)
                  gtcaggggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 >  4:52260‑M2/130‑135 (MQ=255)
                       gggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGc                                                                                                                                                   <  2:1207803‑M2/4‑1 (MQ=255)
                       gggcagtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGc                                                                                                                                                   >  1:1207803‑M2/125‑128 (MQ=255)
                            gtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 >  4:1238476‑M2/120‑125 (MQ=255)
                            gtttcctgaatcagacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 <  3:1238476‑M2/6‑1 (MQ=255)
                                         gacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGc                                                                                                                                                   <  1:1675687‑M2/4‑1 (MQ=255)
                                         gacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGc                                                                                                                                                   >  2:1675687‑M2/107‑110 (MQ=255)
                                         gacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                                                                  <  3:917923‑M2/5‑1 (MQ=255)
                                         gacggcccaattcatcatattcccggcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCg                                                                                                                                                  >  4:917923‑M2/107‑111 (MQ=255)
                                                                  gcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 >  4:366477‑M2/82‑87 (MQ=255)
                                                                  gcgcaattccagcccgtcaggcccggtggctgacgttaactggttgtggtggttatagtaaaacgccgatgccctgccatcCGGCGt                                                                                                                                                 <  3:366477‑M2/6‑1 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGAtt                                                     >  4:1587812‑M2/22‑119 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGAtt                                                     <  3:1587812‑M2/98‑1 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg                                                  <  1:1015596‑M2/101‑1 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg                                                  >  2:1015596‑M2/22‑122 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                       >  1:533719‑M2/22‑149 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                       >  4:1051783‑M2/22‑149 (MQ=255)
                                                                                                                              aaacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAcc                       >  2:1310774‑M2/22‑149 (MQ=255)
                                                                                                                               aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAATACGCCGGGAATATGATGAATGGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                      >  1:568429‑M2/21‑149 (MQ=255)
                                                                                                                               aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAtt                                                                                       <  3:913436‑M2/64‑1 (MQ=255)
                                                                                                                               aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAAtt                                                                                       >  4:913436‑M2/21‑84 (MQ=255)
                                                                                                                               aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                      >  3:1540229‑M2/21‑149 (MQ=255)
                                                                                                                               aacgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                      >  2:653390‑M2/21‑149 (MQ=255)
                                                                                                                                acgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCgg                                                                                                         >  4:858349‑M2/20‑65 (MQ=255)
                                                                                                                                acgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGCCACCgg                                                                                                         <  3:858349‑M2/46‑1 (MQ=255)
                                                                                                                                acgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaaa                                              >  3:719183‑M2/20‑124 (MQ=255)
                                                                                                                                acgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGaaa                                              <  4:719183‑M2/105‑1 (MQ=255)
                                                                                                                                 cgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGcc                                                                                  <  4:1561253‑M2/69‑1 (MQ=255)
                                                                                                                                 cgccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGcc                                                                                  >  3:1561253‑M2/19‑87 (MQ=255)
                                                                                                                                  gccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGaa                                                                    >  4:576189‑M2/18‑100 (MQ=255)
                                                                                                                                  gccgatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGaa                                                                    <  3:576189‑M2/83‑1 (MQ=255)
                                                                                                                                     gatgccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCACTAcc                <  2:533719‑M2/135‑1 (MQ=255)
                                                                                                                                        gccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGtt             >  2:171088‑M2/12‑149 (MQ=255)
                                                                                                                                         ccctgccatcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTa            <  3:1051783‑M2/139‑1 (MQ=255)
                                                                                                                                               catcCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATaa      <  4:1540229‑M2/145‑1 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg                                                  >  2:1732157‑M2/1‑101 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAg                                                  <  1:1732157‑M2/101‑1 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                      <  4:1428956‑M2/129‑1 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCAccc                      >  3:1428956‑M2/1‑129 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCca  <  1:1315254‑M2/149‑1 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCca  <  2:494340‑M2/149‑1 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCca  <  4:853091‑M2/149‑1 (MQ=255)
                                                                                                                                                   CGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCca  <  2:299100‑M2/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
ACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCCGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGCCACCGGGCCTGACGGGCTGGAATTGCGCCGGGAATATGATGAATTGGGCCGTCTGATTCAGGAAACTGCCCCTGACGGCGATATCACCCGCTACCGTTATGATAATCCA  >  NC_000913/3620435‑3620730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.