| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,095,838 | C→A | 5.1% | E49* (GAA→TAA) | rhaA ← | L‑rhamnose isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,095,838 | 0 | C | A | 5.1% | 754.0 / 19.0 | 212 | E49* (GAA→TAA) | rhaA | L‑rhamnose isomerase |
| Reads supporting (aligned to +/- strand): ref base C (94/103); new base A (3/7); total (100/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 216 total aligned reads displayed.
TAGATGGCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGC > NC_000913/4095690‑4095986 | tagatGGCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTc < 2:211577/149‑1 (MQ=255) tGGCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCTGTCAGAATACCGTCTCAGTTTTCaaaa < 2:1566510/149‑1 (MQ=255) gCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑cc > 2:1303369/1‑149 (MQ=255) gCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCAGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAc‑cc < 1:181526/149‑1 (MQ=255) aTGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑c < 3:1766869/146‑1 (MQ=255) aTGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCgg > 4:1767322/1‑149 (MQ=255) tGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGTTTTGAAAAC‑CCGGa > 3:627459/1‑149 (MQ=255) gTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGTTTTGAAAAC‑CCGGaa < 3:1219338/149‑1 (MQ=255) tAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGTTTTGAAAAC‑CCGGaag < 4:627459/149‑2 (MQ=255) tAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGTTTTGAAAAC‑CCGGaag < 1:1518629/149‑2 (MQ=255) tAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGaaa < 4:1154475/149‑1 (MQ=255) tAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGaaa > 2:290578/1‑149 (MQ=255) tAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGaaa > 2:840294/1‑149 (MQ=255) aTTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAAcat > 4:1047255/1‑149 (MQ=255) aTTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAAcat > 1:540381/1‑149 (MQ=255) tAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAAcatca < 1:1269851/149‑1 (MQ=255) tCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGc < 1:267431/149‑1 (MQ=255) cGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTg < 4:1489129/147‑1 (MQ=255) cGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTg > 3:1489129/1‑147 (MQ=255) ccccGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCcagc > 2:927541/1‑149 (MQ=255) cccGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCcagca < 1:840294/149‑1 (MQ=255) cccGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCcagca > 1:882753/1‑149 (MQ=255) ccGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCcagcag > 4:519315/1‑149 (MQ=255) cGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGt < 1:290578/149‑1 (MQ=255) aaTCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCa < 3:1667554/149‑1 (MQ=255) tCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCAtt > 1:361020/1‑149 (MQ=255) tCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCAtt < 2:357323/149‑1 (MQ=255) aGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTc > 2:133753/1‑110 (MQ=255) aGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCcagcag < 3:1527658/141‑1 (MQ=255) aGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCcagcag > 4:1527658/1‑141 (MQ=255) aTAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACggg < 1:429641/149‑1 (MQ=255) aTAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACggg < 1:1192539/149‑1 (MQ=255) gCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGcc > 2:1114299/1‑127 (MQ=255) gCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGcc < 1:1114299/127‑1 (MQ=255) cTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAAc < 4:275570/149‑1 (MQ=255) ttCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACatcatc > 3:1468171/1‑114 (MQ=255) ttCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACatcatc < 4:1468171/114‑1 (MQ=255) ccAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACgg < 1:672724/138‑1 (MQ=255) ccAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACgg > 2:672724/1‑138 (MQ=255) aGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGaaa > 3:1050194/1‑133 (MQ=255) aTCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCaa > 2:1495004/1‑146 (MQ=255) aTCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCaa < 1:1495004/146‑1 (MQ=255) gCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAAcatca > 3:863048/1‑102 (MQ=255) cACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑cc < 4:110287/91‑1 (MQ=255) gTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCt < 2:266879/105‑1 (MQ=255) tCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTCCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGcctc > 2:482013/1‑149 (MQ=255) cACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAAcatca > 1:240381/1‑92 (MQ=255) tGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCg > 3:794127/1‑149 (MQ=255) aTTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAgcgc > 4:185374/1‑138 (MQ=255) aTTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAgcgc < 3:185374/138‑1 (MQ=255) gcTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCAtt > 4:737261/1‑99 (MQ=255) gcTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCAtt < 3:737261/99‑1 (MQ=255) gcTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGa < 1:1646394/114‑1 (MQ=255) ttGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCAc < 4:794127/149‑1 (MQ=255) ttGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTCCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCAc < 1:482013/149‑1 (MQ=255) cGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCaa > 1:3454/1‑110 (MQ=255) cGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCaa < 2:3454/110‑1 (MQ=255) cGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCAccgccg > 1:1876834/1‑149 (MQ=255) aTTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAAc > 1:108333/1‑149 (MQ=255) ttGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAAc > 1:723243/1‑97 (MQ=255) ttGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAAc < 2:723243/97‑1 (MQ=255) ttGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAg > 3:11483/1‑104 (MQ=255) ttGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACa > 4:883911/1‑126 (MQ=255) gCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCt < 3:563073/149‑1 (MQ=255) ctatgGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCa < 4:240948/129‑1 (MQ=255) ctatgGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCa > 3:240948/4‑132 (MQ=255) gCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGa < 2:1628225/115‑1 (MQ=255) ccTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGtt > 3:1253671/1‑96 (MQ=255) ccTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGtt < 4:1253671/96‑1 (MQ=255) cTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATcc > 1:1625878/1‑122 (MQ=255) cTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGc < 4:837291/147‑1 (MQ=255) cTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTa > 3:1574295/1‑149 (MQ=255) cTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTa > 4:1317889/1‑149 (MQ=255) tGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAg > 2:874732/1‑149 (MQ=255) tGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAg < 3:1317889/149‑1 (MQ=255) cccccGGTCAGCGAACCTACCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCa > 2:1573410/1‑149 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAAc > 2:856822/1‑129 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAAc < 1:856822/129‑1 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGc > 1:1005573/1‑139 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGc < 3:449607/139‑1 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGc < 2:1005573/139‑1 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAg > 2:1852392/1‑149 (MQ=255) ccccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAg > 4:1684582/1‑149 (MQ=255) cccGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAgg > 1:1582488/1‑149 (MQ=255) ggTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCt < 2:412997/149‑1 (MQ=255) tCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGtt < 3:255419/129‑1 (MQ=255) tCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGtt > 4:255419/1‑129 (MQ=255) gAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCg > 1:1054872/1‑93 (MQ=255) gAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCg < 2:1054872/93‑1 (MQ=255) gAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCt < 1:1569468/121‑1 (MQ=255) tttCCGGTTTTGAAAAC‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGa > 1:650147/2‑149 (MQ=255) cTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGc > 2:6928/1‑124 (MQ=255) cTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGc < 1:6928/124‑1 (MQ=255) cTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGa < 3:964958/149‑1 (MQ=255) ttCCGGTTTTGAAAAC‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAg < 1:1745957/149‑1 (MQ=255) ttCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGt < 2:563684/139‑1 (MQ=255) ttccggTTTTGAAAACCCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAg > 2:1745957/5‑149 (MQ=255) gggTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACggg < 1:1324582/53‑1 (MQ=255) gggTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGt > 1:412747/1‑149 (MQ=255) tttCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATg < 4:1574295/149‑1 (MQ=255) | TAGATGGCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAA‑CCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGC > NC_000913/4095690‑4095986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |