Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 127,792 G→A 6.1% intergenic (+205/‑120) aceF → / → lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913127,7920GA 6.1% 332.9 / 9.1 99intergenic (+205/‑120)aceF/lpdpyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (45/48);  new base A (3/3);  total (48/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.00e-01

Only 100 of 101 total aligned reads displayed.

GGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTACTGAAATCAAAACTCAGGTCGT  >  NC_000913/127644‑127940
                                                                                                                                                      |                                                                                                                                                    
ggTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAg                                                                                                                                                      >  4:935087/1‑149 (MQ=255)
  ttattaGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTTTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCG                                                                                                                                                    >  2:1595614‑M1/1‑149 (MQ=255)
     ttaGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCa                                                                                                                                                 >  4:719677/1‑149 (MQ=255)
     ttaGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCa                                                                                                                                                 <  3:935087/149‑1 (MQ=255)
     ttaGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCa                                                                                                                                                 >  4:1320871/1‑149 (MQ=255)
         cGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGTGTGCAGCAAGGTAGCAAGCGCCAGAAt                                                                                                                                             <  1:781602/149‑1 (MQ=255)
           aaTAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATcc                                                                                                                                           <  2:1320425/149‑1 (MQ=255)
           aaTAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCCCCAGAATcc                                                                                                                                           <  3:1320871/149‑1 (MQ=255)
                aCAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCTTCACGCCctcaccccagt                                                                                                                                       >  2:1078765‑M1/1‑138 (MQ=255)
                aCAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAgg                                                                                                                                      >  1:1283575/1‑149 (MQ=255)
                  aaaTCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAg                                                                                                                                    >  4:1368188/1‑149 (MQ=255)
                   aaTCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGc                                                                                                                                   <  1:1476247/149‑1 (MQ=255)
                    aTCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCt                                                                                                                                  <  1:1233387/149‑1 (MQ=255)
                           gCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaa                                                                                                                           <  2:1283575/149‑1 (MQ=255)
                                 tgttgtTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATaagtaagt                                                                                                                     <  3:1368188/149‑1 (MQ=255)
                                 tgttgtTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATaagtaagt                                                                                                                     <  1:1595614/149‑1 (MQ=255)
                                  gttgttTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATcc                                                                                                                                           >  4:320374/1‑126 (MQ=255)
                                  gttgttTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATcc                                                                                                                                           <  3:320374/126‑1 (MQ=255)
                                   ttgttTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCTTCACGCCctcaccccagtcacttacttatgtaagctc                                                                                                                    <  1:1078765‑M1/149‑31 (MQ=255)
                                      tttAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCctcaccccagtcacttacttatgtaagctcctgg                                                                                                                >  1:709763‑M1/1‑115 (MQ=255)
                                      tttAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTg                                                                                                                >  2:1257264/1‑149 (MQ=255)
                                            aaTTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCctcaccccagtcacttacttatgtaagctcctggggattc                                                                                                          <  2:709763‑M1/149‑41 (MQ=255)
                                                 ttAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACa                                                                                                                              >  4:51494/1‑124 (MQ=255)
                                                 ttAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACa                                                                                                                              <  3:51494/124‑1 (MQ=255)
                                                 ttAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAg                                                                                                         >  2:1284240/1‑145 (MQ=255)
                                                 ttAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAg                                                                                                         <  1:1284240/145‑1 (MQ=255)
                                                     cAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaagt                                                                                                                         <  3:1103826/125‑1 (MQ=255)
                                                     cAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaagt                                                                                                                         >  4:1103826/1‑125 (MQ=255)
                                                      aaTTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATcccc                                                                                                                                         <  1:713219/108‑1 (MQ=255)
                                                      aaTTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATcccc                                                                                                                                         >  2:713219/1‑108 (MQ=255)
                                                        ttttGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCt                                                                                              <  3:719677/149‑1 (MQ=255)
                                                           tGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCa                                                                                                                                        >  4:565905/1‑104 (MQ=255)
                                                           tGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCa                                                                                                                                        <  3:565905/104‑1 (MQ=255)
                                                             tAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGa                                                                                                                   <  3:198709/123‑1 (MQ=255)
                                                             tAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGa                                                                                                                   >  4:198709/1‑123 (MQ=255)
                                                                aaTACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTg                                                                                                   >  4:353194/1‑136 (MQ=255)
                                                                aaTACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTg                                                                                                   <  3:353194/136‑1 (MQ=255)
                                                                   aCCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCGGCGTTAGCTTCACGCCctcaccccagtcacttacttatgtaagctcctggggattctggcgcttgctaccttgc                                                                                        >  3:1340577‑M1/1‑88 (MQ=255)
                                                                   aCCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCGGCGTTAGCTTCACGCCctcaccccagtcacttacttatgtaagctcctggggattctggcgcttgctaccttgc                                                                                        >  3:185313‑M1/1‑88 (MQ=255)
                                                                   aCCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCGGCGTTAGCTTCACGCCctcaccccagtcacttacttatgtaagctcctggggattctggcgcttgctaccttgc                                                                                        <  4:1340577‑M1/146‑59 (MQ=255)
                                                                   aCCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCGGCGTTAGCTTCACGCCctcaccccagtcacttacttatgtaagctcctggggattctggcgcttgctaccttgc                                                                                        <  4:185313‑M1/146‑59 (MQ=255)
                                                                      gACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGc                                                                                <  1:1257264/149‑1 (MQ=255)
                                                                       aCGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATccc                                                                                                                                          >  1:765322/1‑90 (MQ=255)
                                                                       aCGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATccc                                                                                                                                          <  2:765322/90‑1 (MQ=255)
                                                                           aTAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGa                                                                                                                                     >  3:143562/1‑91 (MQ=255)
                                                                           aTAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAAGa                                                                                                                                     <  4:143562/91‑1 (MQ=255)
                                                                               aaCGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCt                                                                                                                                  <  4:234875/90‑1 (MQ=255)
                                                                               aaCGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCt                                                                                                                                  >  3:234875/1‑90 (MQ=255)
                                                                                   aCCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGaa                                                                                                 <  3:1523214/119‑1 (MQ=255)
                                                                                   aCCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGaa                                                                                                 >  4:1523214/1‑119 (MQ=255)
                                                                                                    gTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaa                                                                                                                           >  4:219612/1‑76 (MQ=255)
                                                                                                    gTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaa                                                                                                                           <  3:219612/76‑1 (MQ=255)
                                                                                                     tATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTgg                                                                                                               <  3:1781741/87‑1 (MQ=255)
                                                                                                     tATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTgg                                                                                                               >  4:1781741/1‑87 (MQ=255)
                                                                                                      aTTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGt                                                                <  4:382986/133‑1 (MQ=255)
                                                                                                      aTTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGt                                                                >  3:382986/1‑133 (MQ=255)
                                                                                                        tACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATaaa                                              >  2:1274204/1‑149 (MQ=255)
                                                                                                           ttCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaa                                                                                                                           <  3:363322/69‑1 (MQ=255)
                                                                                                           ttCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACAtaa                                                                                                                           >  4:363322/1‑69 (MQ=255)
                                                                                                           ttCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTg                                                                                                           >  1:1401374/1‑85 (MQ=255)
                                                                                                           ttCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTg                                                                                                           <  2:1401374/85‑1 (MQ=255)
                                                                                                           ttCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCgg                                                                                 >  3:575289/1‑111 (MQ=255)
                                                                                                           ttCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCgg                                                                                 <  4:575289/111‑1 (MQ=255)
                                                                                                              acaTACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCt                                                                                                                                  >  3:1060276/1‑59 (MQ=255)
                                                                                                              acaTACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCt                                                                                                                                  <  4:1060276/59‑1 (MQ=255)
                                                                                                                aTACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATaga                                      >  1:675159/1‑149 (MQ=255)
                                                                                                                aTACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATaga                                      >  2:1620956/1‑149 (MQ=255)
                                                                                                                    ccTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCtt                                                                                                                                 >  3:664069/1‑54 (MQ=255)
                                                                                                                    ccTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCtt                                                                                                                                 <  4:664069/54‑1 (MQ=255)
                                                                                                                     cTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAg                                                                                                                                       >  3:916563/1‑47 (MQ=255)
                                                                                                                     cTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAg                                                                                                                                       <  4:916563/47‑1 (MQ=255)
                                                                                                                      tATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCctcaccccagtcacttacttatgtaagctcctggggattctggcgctt                                                                                                  >  1:1283177‑M1/1‑35 (MQ=255)
                                                                                                                      tATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCctcaccccagtcacttacttatgtaagctcctggggattctggcgctt                                                                                                  <  2:1283177‑M1/83‑49 (MQ=255)
                                                                                                                      tATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTc                                  <  1:128318/147‑1 (MQ=255)
                                                                                                                      tATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTc                                  >  2:128318/1‑147 (MQ=255)
                                                                                                                      tATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCat                                >  4:1206666/1‑149 (MQ=255)
                                                                                                                        tGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCatga                              >  4:345781/1‑149 (MQ=255)
                                                                                                                           aTTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGaa                                                                                                 >  4:107707/1‑79 (MQ=255)
                                                                                                                           aTTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGaa                                                                                                 <  3:107707/79‑1 (MQ=255)
                                                                                                                           aTTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCAtgatga                           <  3:984226/149‑1 (MQ=255)
                                                                                                                           aTTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCAtgatga                           >  3:885625/1‑149 (MQ=255)
                                                                                                                              tCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTa                        <  4:885625/149‑1 (MQ=255)
                                                                                                                                       agcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAata                                            <  1:1003126/120‑1 (MQ=255)
                                                                                                                                       agcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAata                                            >  2:1003126/1‑120 (MQ=255)
                                                                                                                                       agcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCatga                              >  3:802023/1‑134 (MQ=255)
                                                                                                                                       agcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCatga                              <  4:802023/134‑1 (MQ=255)
                                                                                                                                        gcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGggcgtgaagctaacgccgctgcacccagaaatccatagggtatgtgaagtaataccctaaccaccaccgggtcgttctatccgtcggt                 <  4:185313‑M2/146‑89 (MQ=255)
                                                                                                                                        gcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGggcgtgaagctaacgccgctgcacccagaaatccatagggtatgtgaagtaataccctaaccaccaccgggtcgttctatccgtcggt                 <  4:1340577‑M2/146‑89 (MQ=255)
                                                                                                                                        gcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGggcgtgaagctaacgccgctgcacccagaaatccatagggtatgtgaagtaataccctaaccaccaccgggtcgttctatccgtcggt                 >  3:185313‑M2/1‑58 (MQ=255)
                                                                                                                                        gcaAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGggcgtgaagctaacgccgctgcacccagaaatccatagggtatgtgaagtaataccctaaccaccaccgggtcgttctatccgtcggt                 >  3:1340577‑M2/1‑58 (MQ=255)
                                                                                                                                           aaGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTACTGAAATCaaaa            <  2:675159/149‑1 (MQ=255)
                                                                                                                                           aaGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTACTGAAATCaaaa            <  1:1620956/149‑1 (MQ=255)
                                                                                                                                             ggTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGa                                                                            <  4:1419205/83‑1 (MQ=255)
                                                                                                                                             ggTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGa                                                                            >  3:1419205/1‑83 (MQ=255)
                                                                                                                                              gTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTACTGAAATCAAAACTc         <  3:1206666/149‑1 (MQ=255)
                                                                                                                                                    aaGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGggcgcttgctaccttgctgcacccagaaatccata                                                                      <  2:1283177‑M2/83‑36 (MQ=255)
                                                                                                                                                    aaGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGggcgcttgctaccttgctgcacccagaaatccata                                                                      >  1:1283177‑M2/1‑48 (MQ=255)
                                                                                                                                                     aGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGcc                                                                               >  3:1164935/1‑73 (MQ=255)
                                                                                                                                                     aGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGCGTTAGGGCGTGAAGCTAACGCCGCTGCGGcc                                                                               <  4:1164935/73‑1 (MQ=255)
                                                                                                                                                      gcgcCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTACTGAAATCAAAACTCAGGTCGt  <  1:1274204/149‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                    
GGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGATGAGTACTGAAATCAAAACTCAGGTCGT  >  NC_000913/127644‑127940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: