New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4171273 =	0 (0.000)	3 (0.030)	3/312	NT	100%	noncoding (2633/2904 nt)	rrlB	23S ribosomal RNA of rrnB operon
	?	NC_000913	4212649 =	NA (NA)					noncoding (2607/2904 nt)	rrlE	23S ribosomal RNA of rrnE operon

GCGCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTT  >  NC_000913/4171001‑4171538                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                          atcggtgagctcaacgcagcgccgcggttccacacccgaccaatcatcgtcctcgtcttcaacgttgcttcaggactctcaaggagtcagggagaactcatctcggggcaagtttcgtgcttagaggctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  4:111151‑M1/273‑275 (MQ=255) accgttaagctcaacgaatcctctggcttacacacccggcctagcaccgtagtcgtcttcaacggtccttcaggactctcaaggagtcagggagaactcatgtcggggcaagtttcgtgcttagatactttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtacactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  4:360046‑M1/273‑275 (MQ=255) accggttagctcaccgcatcgctgcgcttacacacccggcctatcaacgtcgtcgtcttcaacgttccttcaggactctcaaggagtcagggagaactcatctcggggcaagtttcgtgcttagatgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  2:439296‑M1/273‑275 (MQ=255)  ccggttagctcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtcgtcttcaacgttccttcaggactctcaaggagtcagggagaactcatctcggggcaagtttcgtgcttagatgctttcggcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         <  1:68744‑M1/3‑1 (MQ=255)  ccggttagctcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtcgtcttcaacgttccttcaggactctcaaggagtcagggagaactcatctcggggcaagtttcgtgcttagatgctttcagcccttatctcttccgcatttagctaccgggcagtgcccttggcatgacaacccgaacaccagttatgcgtccactccggtcctctcgtactaggatcagcccccctcagttctcccgcccccacggccgctagggcccgac                                                                                                                                                                                                                                                                         <  1:142689‑M1/3‑2 (MQ=255)  ccggttagctcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtcgtcttcaacgttccttcaggactctcaaggagtcagggagaactcatctcggggcaagtttcgtgcttagatgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         <  2:48292‑M1/3‑1 (MQ=255)     gttagctcaacgcatcgctgcgcttacacacccggcctatcaacgtcgtcgtcttcaacgttcctttaggactctcaaggagtcagggagaactcattacggggcaagtttcgttcttagatgctttcagcacttatctcttccgcatttagctaccgggcattgccattggcatgacaacccgcacaccagtgatgagtcaactccggtcctcccgtactaggcgcagcccccctcagttctccagcgcccccggaagatagggaacgaccct                                                                                                                                                                                                                                                                      <  4:249267‑M1/6‑5 (MQ=255)                                                                                                         ggggcaagtttcgtgcttagatgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  4:49910‑M1/169‑171 (MQ=255)                                                                                                                             atgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccg                                                                                                                                                                                                                                                                           <  8:367494‑M1/1‑1 (MQ=255)                                                                                                                             atgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccg                                                                                                                                                                                                                                                                           <  7:89994‑M1/1‑1 (MQ=255)                                                                                                                             atgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccg                                                                                                                                                                                                                                                                           <  6:53300‑M1/1‑1 (MQ=255)                                                                                                                             atgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccg                                                                                                                                                                                                                                                                           <  8:8121‑M1/1‑1 (MQ=255)                                                                                                                              tgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGa                                                                                                                                                                                                                                                                          <  8:222511‑M1/2‑1 (MQ=255)                                                                                                                              tgctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagctctccagcgcccacggcagatagggaccGa                                                                                                                                                                                                                                                                          <  8:432033‑M1/2‑1 (MQ=255)                                                                                                                               gctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  8:169041‑M1/147‑149 (MQ=255)                                                                                                                               gctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  8:398794‑M1/147‑149 (MQ=255)                                                                                                                               gctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  6:146850‑M1/147‑149 (MQ=255)                                                                                                                               gctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  7:198680‑M1/147‑149 (MQ=255)                                                                                                                                ctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAAc                                                                                                                                                                                                                                                                        <  7:404794‑M1/4‑1 (MQ=255)                                                                                                                                ctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAAc                                                                                                                                                                                                                                                                        <  6:201624‑M1/4‑1 (MQ=255)                                                                                                                                ctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAAc                                                                                                                                                                                                                                                                        >  8:78120‑M1/146‑149 (MQ=255)                                                                                                                                ctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAAc                                                                                                                                                                                                                                                                        >  6:22759‑M1/146‑149 (MQ=255)                                                                                                                                ctttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAAc                                                                                                                                                                                                                                                                        >  6:367167‑M1/146‑149 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  5:298683‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  8:284856‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  7:153026‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  8:46414‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  6:213744‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  5:405511‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacgccagatagggaccGAACt                                                                                                                                                                                                                                                                       <  7:446663‑M1/5‑1 (MQ=255)                                                                                                                                 tttcagcacttatctcttccgcatttagctaccaggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACt                                                                                                                                                                                                                                                                       <  6:250363‑M1/5‑1 (MQ=255)                                                                                                                                  ttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACTg                                                                                                                                                                                                                                                                      >  5:317283‑M1/144‑149 (MQ=255)                                                                                                                                  ttcagcacttatctcttccgcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGAACTg                                                                                                                                                                                                                                                                      >  5:243051‑M1/144‑149 (MQ=255)                                                                                                                                                     gcatttagctaccgggcagtgccattggcatgacaacccgaacaccagtgatgcgtccactccggtcctctcgtactaggagcagcccccctcagttctccagcgcccacggcagatagggaccGaa                                                                                                                                                                                                                                                                         >  2:40856‑M1/125‑127 (MQ=255)                                                                                                                                                                                                                                             ccctcagttctccagcgcccacggcagatagggaccGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGc                                                                                                                                                           <  8:188411‑M1/113‑1 (MQ=255)                                                                                                                                                                                                                                                tcagttctccagcgcccacggcagatagggaccGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGa                                                                                                                                                        <  5:397402‑M1/116‑1 (MQ=255)                                                                                                                                                                                                                                                 cagttctccagcgcccacggcagatagggaccGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGaa                                                                                                                                                       >  7:188411‑M1/33‑149 (MQ=255)                                                                                                                                                                                                                                                                         gcgcgtgagaACTGAGGGGGGCTGCTCCTAGGACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCtt  <  1:135711/268‑1 (MQ=1)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGa                                                                                                                                                        >  3:44993‑M1/1‑116 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  8:76567‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  8:91590‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  8:290576‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       <  7:456721‑M1/149‑1 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  7:145848‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  6:358691‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  6:315703‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       >  6:224291‑M1/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGa                                                                                                                       <  5:65237‑M1/149‑1 (MQ=255)                                                                                                                                                                                                                                                                                 GAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCg                                    >  2:440376‑M1/1‑232 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                          GCGCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTT  >  NC_000913/4171001‑4171538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.