| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3809140 | 143 (2.800) | 3 (0.060) | 5/244 | NT | 2.0% | coding (601/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| ? | NC_000913 | = 3809156 | 153 (3.120) | coding (617/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3808988‑3809140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggCTACCGGTAACGGTCACCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGA < NC_000913/3809156‑3809014 TCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAAT < 1:465975/149‑1TCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAAT < 3:328177/149‑1 CGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATC > 4:4816/1‑149 aCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCA > 2:260884/2‑149 GCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCA < 2:172821/149‑1 GCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGGCGCTTGCTGCGTCGTATTACGCTGATTGCAGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCA < 3:3100/149‑1 CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG < 3:286893/149‑1 CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG < 1:134720/149‑1 CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG < 2:2898/149‑1 CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG < 1:468149/149‑1 TAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG > 2:375162/1‑149 TAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG > 4:211663/1‑149 CGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG > 3:433451/1‑75 CGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG < 4:433451/75‑1 GTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGGCTACCGGTAACGGTCACCTGA > 3:472095/1‑96 GTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGGCTACCGGTAACGGTCACCTGA < 4:472095/96‑1 AAAAAATAATCAGGTGACCGTTACCGGTAGCCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCT > 2:104659/1‑149 TAATCAGGTGACCGTTACCGGTAGCCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCC > 3:465883/1‑149 ATCAGGTGACCGTTACCGGTAGCCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGA > 1:197184/1‑149 TCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3808988‑3809140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggCTACCGGTAACGGTCACCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGA < NC_000913/3809156‑3809014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |