Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 2,637,683 | G→A | 6.4% | H324Y (CAT→TAT) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,637,683 | 0 | G | A | 6.4% | 200.2 / 4.0 | 62 | H324Y (CAT→TAT) | bamB | BamABCDE complex OM biogenesis lipoprotein |
Reads supporting (aligned to +/- strand): ref base G (28/30); new base A (2/2); total (30/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.06e-01 |
TTCAGTCTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCCACATAATCTGA > NC_000913/2637543‑2637828 | ttCAGTCTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATACAGCAGAt > 1:114389/1‑149 (MQ=255) ttCAGTCTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATACAGCAGAt > 1:335605/1‑149 (MQ=255) tCTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCtt > 2:32946/1‑149 (MQ=255) cTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCttt < 1:14170/149‑1 (MQ=255) cTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCttt < 3:140754/149‑1 (MQ=255) cTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCttt < 4:341449/149‑1 (MQ=255) gAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTtgtg < 3:98880/149‑1 (MQ=255) aaCCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTc > 3:312063/1‑149 (MQ=255) aCCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTcc > 1:314684/1‑149 (MQ=255) gAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAg > 4:245970/1‑149 (MQ=255) tCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCttt > 3:17630/1‑133 (MQ=255) tCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCttt < 4:17630/133‑1 (MQ=255) tttttGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATgc < 2:232228/115‑1 (MQ=255) tttttGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATgc > 1:232228/1‑115 (MQ=255) tttGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCa < 2:470885/149‑1 (MQ=255) tGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAAt < 1:165757/149‑1 (MQ=255) ggCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATgg > 2:350154/1‑149 (MQ=255) aacgaaacgaCCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCa > 2:302815/1‑149 (MQ=255) aacgaaacgaCCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCa > 2:301/1‑149 (MQ=255) cgaCCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCAt < 2:95337/149‑1 (MQ=255) cATCTTCGACGTTAATCCAGTGCAGATAACCTTTACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCAcc > 3:301998/1‑149 (MQ=255) cATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCAcc > 3:360750/1‑149 (MQ=255) aTCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATACAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCAccc < 2:335605/149‑1 (MQ=255) aTCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATACAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCAccc < 2:114389/149‑1 (MQ=255) cTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCgg < 1:302815/149‑1 (MQ=255) cGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAttt < 2:383672/149‑1 (MQ=255) gTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAtttt < 1:263042/149‑1 (MQ=255) gTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAtttt > 1:242862/1‑149 (MQ=255) tAATCCAGTGCAGCTAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGa < 4:301998/149‑1 (MQ=255) aaTCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGAt < 4:418917/149‑1 (MQ=255) tCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCg > 3:60360/1‑149 (MQ=255) cAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATc < 1:343992/146‑1 (MQ=255) cAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATc > 2:343992/1‑146 (MQ=255) gCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCaga < 1:301/149‑1 (MQ=255) aTAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCagataga > 1:284524/1‑149 (MQ=255) ccTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCg > 2:300657/1‑149 (MQ=255) cTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCCGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGa < 3:208601/149‑1 (MQ=255) tCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGAtt < 1:300657/149‑1 (MQ=255) tGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCg > 4:362264/1‑149 (MQ=255) tGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCg > 4:174094/1‑149 (MQ=255) tCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTc < 1:350154/149‑1 (MQ=255) aCCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTcga < 2:242862/149‑1 (MQ=255) aCCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTcga < 3:18911/149‑1 (MQ=255) accaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAtt < 2:319987/110‑1 (MQ=255) accaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAtt > 1:319987/1‑110 (MQ=255) accaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGa > 2:229936/1‑132 (MQ=255) accaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGa < 1:229936/132‑1 (MQ=255) accaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGaa < 3:174094/149‑1 (MQ=255) accaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGaa > 4:167601/1‑149 (MQ=255) ccaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGaaa > 3:121096/1‑149 (MQ=255) ccaGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGaaa < 4:360750/149‑1 (MQ=255) ttGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCAtt < 3:167601/149‑1 (MQ=255) gCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCa > 3:470259/1‑149 (MQ=255) taCAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAAcc < 4:60360/149‑1 (MQ=255) aGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAtt > 4:103112/1‑92 (MQ=255) aGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCAtt < 3:103112/92‑1 (MQ=255) gTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCca < 2:314684/149‑1 (MQ=255) gTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAACGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCca > 4:342175/1‑149 (MQ=255) tCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGGAATCATTCACCGAACCCAGTTCGCGTTTCcac > 2:469832/1‑149 (MQ=255) gcagGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATTACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCCACATa > 2:6338/1‑149 (MQ=255) gcagGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCCACATa > 2:158437/1‑149 (MQ=255) agGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGAc > 2:377782/1‑83 (MQ=255) agGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGAc < 1:377782/83‑1 (MQ=255) gATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCCACATAATCTGa < 2:284524/149‑1 (MQ=255) | TTCAGTCTGGAAACCGGAACTATCAACTTTTTGCTGGGCAACGAAACGACCATCTTCGACGTTAATCCAGTGCAGATAACCTTCACTGTCACCGACCACCAGGTTGCCATTATACAGCACCGGAGAAGTCAGCAGGCGATGCAGCAGATCGCTTTGTGTCCACAGCGTAACGCCGCCATCAATGGTCAACGCCATCACCCGGTCATTTTGATCGACCAGATAGATGCGATTGCCGTCGACGATGAAATCATTCACCGAACCCAGTTCGCGTTTCCACATAATCTGA > NC_000913/2637543‑2637828 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |