mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 23.6% | 80.0 / 13.4 | 55 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 69 (0.650) | 26 (0.260) | 24/482 | 3.2 | 26.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 80 (0.800) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1173496 | 94 (0.890) | 6 (0.060) +CAC |
5/500 | 9.1 | 6.0% | coding (469/3447 nt) | mfd | transcription‑repair coupling factor |
| ? | NC_000913 | 1173497 = | 94 (0.880) | coding (468/3447 nt) | mfd | transcription‑repair coupling factor | |||||
| * | ? | NC_000913 | 2054966 = | 80 (0.750) | 4 (0.040) | 4/494 | 9.6 | 5.1% | intergenic (+7/‑95) | shiA/amn | shikimate transporter/AMP nucleosidase |
| ? | NC_000913 | 2054990 = | 73 (0.710) | intergenic (+31/‑71) | shiA/amn | shikimate transporter/AMP nucleosidase | |||||
| * | ? | NC_000913 | = 382062 | NA (NA) | 4 (0.040) | 4/514 | 9.9 | NA | noncoding (803/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382066 = | NA (NA) | noncoding (807/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1209618 | 80 (0.750) | 19 (0.190) | 3/484 | 10.1 | 19.0% | pseudogene (2/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| ? | NC_000913 | 2471897 = | 87 (0.860) | pseudogene (226/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1297359 = | 105 (0.980) | 3 (0.030) | 3/492 | 10.2 | 2.9% | coding (763/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| ? | NC_000913 | = 1297355 | 98 (0.960) | coding (767/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase | |||||
| * | ? | NC_000913 | = 2339938 | 128 (1.230) | 5 (0.050) +GTG |
3/496 | 10.3 | 3.8% | coding (372/723 nt) | ubiG | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase |
| ? | NC_000913 | 2339939 = | 128 (1.200) | coding (373/723 nt) | ubiG | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase | |||||
| * | ? | NC_000913 | = 1364384 | 82 (0.780) | 4 (0.040) +GAC |
3/500 | 10.3 | 4.7% | coding (153/1281 nt) | puuB | gamma‑glutamylputrescine oxidoreductase |
| ? | NC_000913 | 1364385 = | 82 (0.770) | coding (154/1281 nt) | puuB | gamma‑glutamylputrescine oxidoreductase | |||||
| * | ? | NC_000913 | 4437282 = | 148 (1.380) | 3 (0.030) | 3/504 | 10.4 | 2.4% | coding (528/741 nt) | cysQ | 3'(2'),5'‑bisphosphate nucleotidase |
| ? | NC_000913 | 4437383 = | 100 (0.950) | coding (629/741 nt) | cysQ | 3'(2'),5'‑bisphosphate nucleotidase | |||||
| * | ? | NC_000913 | = 3771228 | 227 (2.120) | 4 (0.040) | 3/508 | 10.4 | 1.7% | coding (152/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump |
| ? | NC_000913 | 3771232 = | 226 (2.140) | coding (148/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||