New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	233792 =	34 (0.780)	4 (0.090)	4/250	NT	11.2%	coding (164/1359 nt)	mltD	putative membrane‑bound lytic murein transglycosylase D
	?	NC_000913	233828 =	30 (0.700)					coding (128/1359 nt)	mltD	putative membrane‑bound lytic murein transglycosylase D

CCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGCGAG  >  NC_000913/233644‑233934                                                                                                                                                     |                                                                                                                                               aagcaactattgacacacacatgaaggcaaaagcgatattactcgcctctgtcctgctcgtgggttgccagagtaccggcaacgttcaacagcacgcacagagcctttctgcagctggtcaaggggaagcagcaaagtttacaagtcag                                                                                                                                                >  1:378263‑M1/149‑149 (MQ=255)   gcaactattgacacacacatgaaggcaaaagcgatattactcgcctctgtcctgctcgtgggttgccagagtaccggcaacgttcaacagcacgcacagagcctttctgcagctggtcaaggggaagcagcaaagtttacaagtcaGgc                                                                                                                                              <  1:193614‑M1/3‑1 (MQ=255)    caactattgacacacacatgaaggcaaaagcgatattactcgcctctgtcctgctcgtgggttgccagagtaccggcaacgttcaacagcacgcacagagcctttctgcagctggtcaaggggaagcagcaaagtttacaagtcaGgc                                                                                                                                              <  4:121840‑M1/3‑1 (MQ=255)     tACATATACGGCTCTGCCCGTAAAGTTACATCGTGGGGATAGCTCTTATTGCGTAAATATTTCTGTTTGTGTTCGCGAATCCGGTCATTTTCCGGCATTCCCATCTTTAGCTCGTCTCCAATGAAAACCCACAAGTCACCATCTGgcg                                                                                                                                             >  3:84810/1‑148 (MQ=255)          ataCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATa                                                                                                                                        >  3:337212/1‑148 (MQ=255)           taCGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAg                                                                                                                                       >  4:124166/1‑148 (MQ=255)                ctctGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTcc                                                                                                                                 <  2:156048/149‑1 (MQ=255)                 tctGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTccc                                                                                                                                >  2:403113/1‑149 (MQ=255)                    gCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATc                                                                                                                             <  1:277082/149‑1 (MQ=255)                       cGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtc                                                                                                                          <  1:53670/149‑1 (MQ=255)                         tAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGGCGTCCCATCGtcc                                                                                                                         >  4:344468/1‑148 (MQ=255)                            aGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGtccatcc                                                                                                                     <  2:44969/149‑1 (MQ=255)                                   tCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGc                                                                                                              <  1:52709/149‑1 (MQ=255)                                               ctctgtcctgctcgtgggttgccagagtaccggcaacgttcaacagcacgcacagagcctttctgcagctggtcaaggggaagcagcaaagtttacaagtcaGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGAc                                                                                                         >  1:306067‑M1/103‑142 (MQ=255)                                               ctctgtcctgctcgtgggttgccagagtaccggcaacgttcaacagcacgcacagagcctttctgcagctggtcaaggggaagcagcaaagtttacaagtcaGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGAc                                                                                                         <  2:306067‑M1/40‑1 (MQ=255)                                                     ttGCGTAAATATTTCTGTTACTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTtg                                                                                             <  4:276443/148‑1 (MQ=255)                                                          tAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCtt                                                                                       >  1:314534/1‑149 (MQ=255)                                                                            ttCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAg                                                                     >  2:355531/1‑149 (MQ=255)                                                                               gcgAATCCGGTCATTTTACGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGaaa                                                                  >  2:381246/1‑149 (MQ=255)                                                                                          cATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCtt                                                                                       <  4:112607/117‑1 (MQ=255)                                                                                          cATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCtt                                                                                       >  3:112607/1‑117 (MQ=255)                                                                                                ccGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTg                                                  <  4:84810/148‑1 (MQ=255)                                                                                                       tCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGt                                          <  1:267112/149‑1 (MQ=255)                                                                                                        cctttctgcagctggtcaaggggaagcagcaaagtttacaagtcaGGCGCGATAGACGTCCCATCGTCCATCCATCGTGc                                                                                                              <  2:400118‑M1/35‑1 (MQ=255)                                                                                                        cctttctgcagctggtcaaggggaagcagcaaagtttacaagtcaGGCGCGATAGACGTCCCATCGTCCATCCATCGTGc                                                                                                              >  1:400118‑M1/46‑80 (MQ=255)                                                                                                          cATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTg                                        <  3:239512/148‑1 (MQ=255)                                                                                                          cATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTg                                        >  3:261143/1‑148 (MQ=255)                                                                                                            tCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTtgctg                                                                                          <  3:21074/96‑1 (MQ=255)                                                                                                            tCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTtgctg                                                                                          >  4:21074/1‑96 (MQ=255)                                                                                                            tCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGcc                                      <  4:337212/148‑1 (MQ=255)                                                                                                             cTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCg                                     >  3:378545/1‑148 (MQ=255)                                                                                                              tttAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCgg                                    >  4:247908/1‑148 (MQ=255)                                                                                                                tAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTAc                                 <  2:174677/149‑1 (MQ=255)                                                                                                                     cgtcgCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTg                             >  4:87993/1‑148 (MQ=255)                                                                                                                     cgtcgCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTg                             <  3:190964/148‑1 (MQ=255)                                                                                                                             ctGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCa                     <  3:35862/147‑1 (MQ=255)                                                                                                                                      cacaAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGAc           >  2:331806/1‑149 (MQ=255)                                                                                                                                            tCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGc     >  1:224261/1‑149 (MQ=255)                                                                                                                                             cACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGc     >  4:83459/1‑148 (MQ=255)                                                                                                                                              aCCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGCg    <  4:64607/148‑1 (MQ=255)                                                                                                                                              aCCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGCGa   >  2:95803/1‑149 (MQ=255)                                                                                                                                               ccATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGCGAg  <  2:314534/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CCAGTACATATACGGCTCTGCCCGTAAAGTTACATCGTGGAGATAGCTCTTATTGCGTAAATATTTCTGTTTCTGTTCGCGAATCCGGTCATTTTCCGGAATTCCCATCTTTAGCTCGTCGCCAATGAAAGCCCACAAGTCACCATCTGGCGCGATAGACGTCCCATCGTCCATCCATCGTGCCTGACTTGTAAACTTTGCTGCTTCCCCTTGACCAGCTGCAGAAAGGCTCTGTGCGTGCTGTTGAACGTTGCCGGTACTCTGGCAACCCACGAGCAGGACAGAGGCGAG  >  NC_000913/233644‑233934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.