New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4377614 =	31 (0.710)	4 (0.100)	4/244	NT	12.0%	coding (109/534 nt)	blc	outer membrane lipoprotein cell division and growth lipocalin
	?	NC_000913	4377646 =	29 (0.690)					coding (77/534 nt)	blc	outer membrane lipoprotein cell division and growth lipocalin

ATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAA  >  NC_000913/4377504‑4377790                                                                                                                                               |                                                                                                                                                 aTTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACgcggcg                                                                                                                                            >  1:175979/1‑149 (MQ=255)     aGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACgcggcggcg                                                                                                                                         <  3:353721/148‑1 (MQ=255)       gccgccGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAg                                                                                                                                      <  1:122178/149‑1 (MQ=255)              tcatcaCGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACt                                                                                                                               <  1:1955/149‑1 (MQ=255)               catcaCGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTa                                                                                                                                       >  3:198846/1‑140 (MQ=255)               catcaCGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTa                                                                                                                                       <  4:198846/140‑1 (MQ=255)                   agtaaggaaacatttatgcgcctgctccctctcgttgccgcagcgacagctgcatttctggtcgttgcctgcagttctcctacgccgccgcgTGGCGTCGAAATTATTTACTACGGTcacgccac                                                                                                                                                  >  2:154091‑M1/93‑125 (MQ=255)                   agtaaggaaacatttatgcgcctgctccctctcgttgccgcagcgacagctgcatttctggtcgttgcctgcagttctcctacgccgccgcgTGGCGTCGAAATTATTTACTACGGTcacgccac                                                                                                                                                  <  1:154091‑M1/33‑1 (MQ=255)                   aCGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAgg                                                                                                                          >  1:6040/1‑149 (MQ=255)                          cTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGa                                                                                                                    <  3:256829/148‑1 (MQ=255)                                           tttttCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGaa                                                                                                              >  1:63222/1‑137 (MQ=255)                                           tttttCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGaa                                                                                                              <  2:63222/137‑1 (MQ=255)                                           tttttCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCg                                                                                                  >  1:112178/1‑149 (MQ=255)                                           tttttCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCg                                                                                                  >  2:395679/1‑149 (MQ=255)                                            ttttCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCg                                                                                                  >  4:167740/1‑148 (MQ=255)                                                    tCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCa                                                                                          >  3:193626/1‑148 (MQ=255)                                                          ttCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACgaga                                                                                    >  4:35462/1‑148 (MQ=255)                                                                                 cAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTcc                                                            <  1:395679/149‑1 (MQ=255)                                                                                       cATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACt                                                       >  3:96626/1‑148 (MQ=255)                                                                                              ggTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGttttt                                                >  4:315585/1‑148 (MQ=255)                                                                                              ggTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTGTCCTTACTGGttttt                                                <  4:212194/148‑1 (MQ=255)                                                                                                tACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGttttttt                                              <  3:315585/148‑1 (MQ=255)                                                                                                  ccGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCt                                            <  4:394686/148‑1 (MQ=255)                                                                                                   cGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTa                                           <  4:193626/148‑1 (MQ=255)                                                                                                           cGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGa                                   <  3:167740/148‑1 (MQ=255)                                                                                                            gTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATg                                 >  1:190703/1‑149 (MQ=255)                                                                                                              gtggcgtgaccgtagtaaataatttcgacgccaCGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACt                                                       >  2:154091‑M2/34‑125 (MQ=255)                                                                                                              gtggcgtgaccgtagtaaataatttcgacgccaCGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACt                                                       <  1:154091‑M2/92‑1 (MQ=255)                                                                                                               tggcgtgaccgtagtaaataatttcgacgccaCGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTAc                                                        >  3:123598‑M2/33‑123 (MQ=255)                                                                                                               tggcgtgaccgtagtaaataatttcgacgccaCGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTAc                                                        <  4:123598‑M2/91‑1 (MQ=255)                                                                                                               TGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGAc                               >  4:134803‑M1/1‑148 (MQ=255)                                                                                                                    TCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCaa                          >  3:376756‑M1/1‑148 (MQ=255)                                                                                                                     cGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAg                         >  4:172592/1‑148 (MQ=255)                                                                                                                       aaaTTATTTACTACGGTCACGCCACGCCGCGGCGTAGGAGAACTGGAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGa                       >  4:248668/1‑148 (MQ=255)                                                                                                                              ttACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCgg                <  3:1889/148‑1 (MQ=255)                                                                                                                              ttACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGga               <  1:884/149‑1 (MQ=255)                                                                                                                                   acGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGaaaa          <  2:190703/149‑1 (MQ=255)                                                                                                                                        cacgccacgcGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTc      <  3:172592/148‑1 (MQ=255)                                                                                                                                           gccaCGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGaa  >  2:140770‑M2/5‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                 ATTCAGGCCGCCGTCATCACGCAGGCTGTATGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAA  >  NC_000913/4377504‑4377790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.