New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3880655	248 (1.200)	4 (0.020)	4/304	NT	1.7%	coding (567/1074 nt)	recF	gap repair protein
	?	NC_000913	= 3880717	237 (1.220)					coding (505/1074 nt)	recF	gap repair protein
Rejected: Frequency below/above cutoff threshold.

ACGTAAGGCGCACATCAACAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3880376‑3880655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaggtgACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATT  <  NC_000913/3880717‑3880448                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGGAAGGAGAACATCAACAGCTGAAGCTGCCCACGCGAGAAGGTATCGTCCACGGGCGCACCGTCGGCGGGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCC                                                                                                                                                                                                                                                                                     <  4:432082/275‑1      AGGCGCACATCAACAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGT                                                                                                                                                                                                                                                                                 >  2:162114/1‑274                                                                                                            TGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTG                                                                                                                                                                                                                                                                                >  3:163811/1‑173                                                                                                            TGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTG                                                                                                                                                                                                                                                                                <  1:163811/173‑1                                                                                                                GGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCG                                                                                                                                                                                                                             >  2:459050/1‑220                                                                                                                    AGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGC                                                                                                                                                                                                                         <  4:459050/220‑1                                                                                                                            ATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGC                                                                                                                                                                                                                                                                                        >  6:251775/1‑149                                                                                                                              CGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGC                                                                                                                                                                                                                                                                                      >  6:648882/1‑149                                                                                                                              CGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCG                                                                                                                                                                                                                                                                                       >  8:681867/1‑148                                                                                                                                CGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCC                                                                                                                                                                                                                                                                                     >  7:266655/1‑148                                                                                                                                 GTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCA                                                                                                                                                                                                                                                                                    <  7:362780/148‑1                                                                                                                                   TCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGG                                                                                                                                                                                                                                                                                  >  8:116557/1‑148                                                                                                                                   TCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGG                                                                                                                                                                                                                                                                                  >  7:9224/1‑148                                                                                                                                   TCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGG                                                                                                                                                                                                                                                                                  >  7:852788/1‑148                                                                                                                                     AAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTG                                                                                                                                                                                                                                                                                <  8:887574/148‑1                                                                                                                                                 CAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGACACGTTACGAAC                                                                                                                                                                                                                                                                   >  6:672139/1‑149                                                                                                                                                                                                         GAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGG                                                                                                                                                                                                           <  5:672139/149‑1                                                                                                                                                                                                                                                                       gcggcgcgtgGCCAGGGGACACGTTACGAACAGCTACGCCCGGGGGATAAAGGGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGGGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGC               <  4:243234/265‑1                                                                                                                                                                                                                                                                             GCGCGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCACCACCGCGCACGGCCCGCACAAAGCGGACT          >  2:534929/1‑274                                                                                                                                                                                                                                                                               GCGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTT                                                                                                                                     <  5:1030418/149‑1                                                                                                                                                                                                                                                                                CGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGCTAAAGAGCTGATCCCGCTTGCGGAGCACATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTCTCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTCACTTTCTCTTTCCATCCCGGTTGGGAGAACGAGACAGAATCTGCTGAGGTGCTGGCGCGTAATTTTGAACGCGAGCGCCCGCTAACCTACCACGCGCCAGGCCCGCCCAACGCGGAaatat       >  4:466081/1‑269                                                                                                                                                                                                                                                                                CGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTACTCCCTGAGTTTTC                                                                                                                                    <  5:150909/149‑1                                                                                                                                                                                                                                                                                CGCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGAAAATCAGCACCTGGCGCGCCGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCTCTGAGTTTT                                                                                                                                     <  7:651300/148‑1                                                                                                                                                                                                                                                                                CGCCAGGGGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTT                                                                                                                                     <  8:525464/148‑1                                                                                                                                                                                                                                                                                 GCCAGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCCGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGC     >  2:97523/1‑275                                                                                                                                                                                                                                                                                    AGGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTG                                                                                                                                >  5:895266/1‑149                                                                                                                                                                                                                                                                                     GGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATT  >  2:252115/1‑274                                                                                                                                                                                                                                                                                     GGTGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTG                                                                                                                                                                                                            >  4:40027/1‑72                                                                                                                                                                                                                                                                                       TGACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGAC                                                                                                                              >  8:932817/1‑148                                                                                                                                                                                                                                                                                        GACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACT                                                                                                                             <  7:18/148‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGTAAGGCGCACATCAACAGCTTAAGCTGCCCACGCGATAAGGTATCTTCCACCGGCGCACCGTCGGCGCGAATGCGTAAGTCCGCTTTGTGCGGGCCGTGCGCGGTGTAGGTTAGCTGGCGATCGCGTTCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3880376‑3880655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaggtgACACGTTACGAACAGCTACGCCCGTGGGATAAAGAGCTGATCCCGCTGGCGGAGCAAATCAGCACCTGGCGCGCGGAGTATAGCGCCGGTATCGCGGCCGATATGGCTGATACCTGTAAGCAATTTCTCCCTGAGTTTTCTCTGACTTTCTCTTTCCAGCGCGGCTGGGAGAAAGAGACAGAATATGCTGAGGTGCTGGAACGTAATTTTGAACGCGATCGCCAGCTAACCTACACCGCGCACGGCCCGCACAAAGCGGACTTACGCATT  <  NC_000913/3880717‑3880448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.