New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3901949	193 (0.940)	3 (0.020)	3/308	NT	1.5%	coding (272/1617 nt)	bglH	carbohydrate‑specific outer membrane porin, cryptic
	?	NC_000913	= 3901970	217 (1.110)					coding (251/1617 nt)	bglH	carbohydrate‑specific outer membrane porin, cryptic
Rejected: Frequency below/above cutoff threshold.

ATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3901666‑3901949 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccagtaGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTATTACCGTTCTGGTTGGGGGACCGCCTCTCATGGTTCACCTAAATCATGGGCGATTGGTTCTCTGGGCCGCTTTGGTAACGAATACTCCGGCTGGTTTGATTTGCAGTTAAAACAACGTGTCTACAACGAAAACGGCA  <  NC_000913/3901970‑3901695                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tTCCATCATCCCAACGTCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGTCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGAC                                                                                                                                                                                                                                                                                           <  1:199712/278‑1    CATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCTCCCATGATTTAGGTGAACCATGAGAGGCGGTTCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACATATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGA                                                                                                                                                                                                                                                                                            >  2:326881/1‑275    CATCATCACAACCGCAGCAACCCGTTTGCCGTTTTCGTTTTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTG                                                                                                                                                                                                                                                                                             <  2:572199/274‑1     attATCAAAACGGCATCAAACCGTTGGCCGTTTTCGTTGTAGAAACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTAGTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGAC                                                                                                                                                                                                                                                                                           <  4:645744/272‑1     ATCATCACAACGGCATAAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGAAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGAC                                                                                                                                                                                                                                                                                           <  2:393834/275‑1       CATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCNGTCCCCCAACCAGAACGGTAATAGCCGTTGGAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATTTTTAAGAGTNAGTGAAAAAAAAATTGAGCATTTCCNAATGGAATTATTATTTTCTTTTTTTACCcataa                                                                                                                                                                                                                                                                                     >  3:136416/1‑274       CATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGATTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTTACCt                                                                                                                                                                                                                                                                                         >  2:622952/1‑274                      AACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGAC                                                                                                                                                                                                                                                                                           <  2:521729/258‑1                                                                                         TTACCAAAGCGGCCCAGAGAACCAATCGGCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGAC                                                                                                                                                                                                                                                                                           <  2:393461/191‑1                                                                                                                                  TGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTG                                                                                                                                                                                                                                                                                             <  8:594140/148‑1                                                                                                                                   GAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGAC                                                                                                                                                                                                                                                                                           >  6:332204/1‑149                                                                                                                                   GAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGA                                                                                                                                                                                                                                                                                            <  8:426287/148‑1                                                                                                                                     ACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACC                                                                                                                                                                                                                                                                                          >  8:975263/1‑148                                                                                                                                      CCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAG                                                                                                                                                                                                                                                                                        <  6:538715/149‑1                                                                                                                                                                                             TTTCATCTTTCACAAATTTACTGAATTCTGTCAGAGACATGGAAGAATAAATCGAGCCTCTCTGACTGGCATTTATCTCTTCATTTTTGACCAGTAGTGCCGCAAAACCTGATGCTGTCCTGGTCAAAAATGAGGAGAAAAATGCCAG                                                                                                                                                                                                                                  <  8:886137/148‑1                                                                                                                                                                                                  TCTTTCACACATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTC                                                                                                                                                                                                                                                         >  6:345701/1‑120                                                                                                                                                                                                  TCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTC                                                                                                                                                                                                                                                         <  5:345701/120‑1                                                                                                                                                                                                                                                                                     GACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTATTACCGTTCTGGTTGGGGGACCGCCTCTCATGGTTCACCTAAATCATGGGCGATTGGTTCTTTGGGCCTCTTTGGTAACGAATACTCAGGCTGGTTTTATTTGCAGTTAAAACAACGTATCTACAACCAAAt       >  1:167516/1‑278                                                                                                                                                                                                                                                                                     GACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTATT                                                                                                                                         >  5:722389/1‑149                                                                                                                                                                                                                                                                                     GACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTAT                                                                                                                                          <  8:640181/148‑1                                                                                                                                                                                                                                                                                     GACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACA                                                                                                                                                  <  4:118938/140‑1                                                                                                                                                                                                                                                                                     GACCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAACGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTAT                                                                                                                                          >  8:630175/1‑148                                                                                                                                                                                                                                                                                       CCAGTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTATTAC                                                                                                                                       >  5:65973/1‑149                                                                                                                                                                                                                                                                                          GTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTATTACCGT                                                                                                                                    >  5:770908/1‑149                                                                                                                                                                                                                                                                                          GTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAA                                                                                                                                                 <  6:1059945/136‑1                                                                                                                                                                                                                                                                                          GTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAA                                                                                                                                                 >  5:1059945/1‑136                                                                                                                                                                                                                                                                                          GTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAA                                                                                                                                                 >  5:831227/1‑136                                                                                                                                                                                                                                                                                          GTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAA                                                                                                                                                 <  6:831227/136‑1                                                                                                                                                                                                                                                                                          GTAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCAAGTGAGACAGGCTCGATTTATTCTTCCATGACCCTGAAAGATTTCAGTAAATTTGTGACAGATGAAATTGGCTTTAGTTACAACGGCTATTACCGTTCTGGTTGGGTGACCGCCTCTCATGGTTCACATCAATCATGGGCGATGTGTTCACTGGGCCGCTTTGTTAACCAATCCTCAGGCGGGGTTGGTTTGNGGTTCNNAAAACATGTGTTAAAAAAAAACGGCc  >  3:7343/1‑278                                                                                                                                                                                                                                                                                           TAGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGTAATTGGCTTTAGTTACAACGGCTATTACCGTT                                                                                                                                   >  6:191021/1‑149                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATCCATCATCACAACGGCATCAACCCGTTTGCCGTTTTCGTTGTAGACACGTTGTTTTAACTGCAAATCAAACCAGCCGGAGTATTCGTTACCAAAGCGGCCCAGAGAACCAATCGCCCATGATTTAGGTGAACCATGAGAGGCGGTCCCCCAACCAGAACGGTAATAGCCGTTGTAACTAAAGCCAATTTCATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3901666‑3901949 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccagtaGTGCCGCAAAACCTGATGCTGTACTGGTCAAAAATGAAGAGAAAAATGCCAGTGAGACAGGCTCGATTTATTCTTCCATGACTCTGAAAGATTTCAGTAAATTTGTGAAAGATGAAATTGGCTTTAGTTACAACGGCTATTACCGTTCTGGTTGGGGGACCGCCTCTCATGGTTCACCTAAATCATGGGCGATTGGTTCTCTGGGCCGCTTTGGTAACGAATACTCCGGCTGGTTTGATTTGCAGTTAAAACAACGTGTCTACAACGAAAACGGCA  <  NC_000913/3901970‑3901695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.