Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,307,294 | A→T | 7.5% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,307,294 | 0 | A | T | 7.5% | 635.0 / 30.4 | 187 | L169Q (CTG→CAG) | alsK | D‑allose kinase |
Reads supporting (aligned to +/- strand): ref base A (88/84); new base T (6/8); total (94/93) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.90e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.14e-03 |
Only 100 of 194 total aligned reads displayed.
CGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTT > NC_000913/4307022‑4307571 | cGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAgg < 4:378787/275‑1 (MQ=255) gAAGGCGGGCCTCTCCCTCCCGCCACCGCCCGGGATCACCGCTCCGGGATCGAACAGATTAATGCTGGTGGCAATGGGCCGGGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGt < 4:724114/274‑1 (MQ=255) aGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCAAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGGTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTc < 2:125378/274‑1 (MQ=255) atCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCCAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGGTCGTACAAGCGTCGTAGCGCCATTCCAGAGCAATGGGTTGCCAAGCACCCAGAATGTCCCTAAGCGCAGCGTTGAGTGATATTCCCNNNGGGCAGCGGGCCCAGATGGACTCCCACA‑CCgc > 3:213341/1‑277 (MQ=255) ccGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGCAAAGATCGCGCAATGGGTAATTTCGGTGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGTTTGCCACACGCGCAGTGTTTGGCCATATATCCCAGGGGGATATGACCCATTTCGCCTG‑CACACCCGTGTTAACCCCTCCACGGCGCAcc > 2:195213/1‑274 (MQ=255) ccGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTTCACCCGTCCACGGCGCACCGTTc > 1:87391/1‑278 (MQ=255) aaCAGAGTAAGTCTGGGGGAAAGGGCCCGTGCCGCGGTTTCAAGCAGACTGTGGAGGAAAGGTGCGTGTGCCGCATGGACGAAAAGATCGCGAAATGGGTAATGTCGGGGCTGTTGGTCGTACCAGCGTCTTAGCGCCATGCCAGAGCAATTGGTGTCCAGGCACCCAGGATTGCCACACGCGCAGTGGTGGGTCAGATCTCCCAGGGGGATATGCCCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGCTCATCCACACTGCg < 1:76143/276‑1 (MQ=255) agtccTGGTGGCAATGTCCCGTGCCTGGTTTTCAAGCCGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGGCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATccc < 1:213341/275‑1 (MQ=255) aTGCTGGGGGAGATGGCCCGTGCCGCGTTTTCAAGCAGACTGTGGACGAAAGGGGCGTTTTCCGCATGGAGGAAAAGACCGGGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGGGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCa < 4:448669/274‑1 (MQ=255) gtggCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCCGTTTTTGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGTACCCGTCCACGGCGCACCGTTCATCCACACTCTGAACCCCATCCCCg > 2:374958/1‑274 (MQ=255) gtggCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGCTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGCAATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCCAACCGTTCCTCCACACTGCGAACCCCATCCCCGt > 2:475919/1‑275 (MQ=255) tGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCAGTACCGAGACAGgccg > 2:335881/1‑275 (MQ=255) aCTCTGGACGACAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCATCGTCTTAGCGCCATTCCCGAGCAATTGGTTACCAGGCACCCAGGACTACCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCACCTGCTCCA‑CCGTGGGCACCCTTCCACGACGCCGCGGTCAGCCACACTCCTAACCCCATCCACGTACCGAGCTAGGCCCCCAGAACCAtttgatccg > 4:679623/1‑270 (MQ=255) tGGACGAAAGGGGCGTTTTCCGCATGGCCGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTCTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCCTCCACACTGCGAACCCCATCCCCGTACCCAGACAGCCCCCCAGAACCCGTTTTTGCGTaa > 4:41051/1‑274 (MQ=255) ggACGAAAGTGGGTGTTTCCGCATGGACGAAAAGGTCGCCCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATGGGTTTCCAGGCACCCAGGATTGCCACACGCGAAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg < 4:585183/275‑1 (MQ=255) cGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCa < 2:431692/188‑1 (MQ=255) aaaGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAg < 6:791543/149‑1 (MQ=255) aGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAgg < 8:237859/148‑1 (MQ=255) aGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCacac > 4:470052/1‑213 (MQ=255) ggggCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAggg < 8:89276/148‑1 (MQ=255) gggCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAggggg > 6:61268/1‑149 (MQ=255) ggCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGa < 5:175289/149‑1 (MQ=255) gCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGa < 7:77667/148‑1 (MQ=255) ttttCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATg > 5:354493/1‑149 (MQ=255) ttCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCCCCCTGGGAGATATGa < 8:798862/148‑1 (MQ=255) tCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGAcc < 6:513888/149‑1 (MQ=255) tCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCCCCCTGGGAGATATGAcc < 5:84708/149‑1 (MQ=255) cGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGcc < 8:317220/148‑1 (MQ=255) gAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGTTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTg > 5:1016565/1‑149 (MQ=255) cgcgCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGt > 4:526850/1‑235 (MQ=255) gcgcAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCgt < 5:271495/149‑1 (MQ=255) gcgcAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCg < 7:149112/148‑1 (MQ=255) cAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGtgtg > 6:281536/1‑149 (MQ=255) gggTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCacac > 2:453204/1‑176 (MQ=255) ggTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCAccc > 6:185420/1‑149 (MQ=255) gTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCCCCCTGGGAGATATGa > 6:424199/1‑118 (MQ=255) tAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCCCCCTGGGAGatat > 7:259359/1‑115 (MQ=255) tAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCCCCCTGGGAGatat < 8:259359/115‑1 (MQ=255) gggCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCCCCCCTCCACGGCGCACCGTTCATCCCCACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGACCCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTTCCGGTTCCCGTCTCTGGAAAACTcc > 4:319571/1‑273 (MQ=255) gggCTGTTGTTCGGACCAGCGTCTTAGCGCCATTCAAGAGCAATTGGTTTCCAGGCACCCAGTATGGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCaa < 2:202707/275‑1 (MQ=255) gggCTGTTCTTCGTACCAGCGTCTTAGCGCCATTCCGGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCGGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCaa < 2:509237/275‑1 (MQ=255) ggCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGgcg > 8:449163/1‑148 (MQ=255) tgttgtTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCa < 2:588614/132‑1 (MQ=255) gttgttCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCCCCCTGGGAGATATGAc < 5:584735/105‑1 (MQ=39) cGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCAt < 7:733934/148‑1 (MQ=255) aGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCacac > 8:1022768/1‑148 (MQ=255) aGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACt > 5:498277/1‑149 (MQ=255) aGCGTCTTAGCGCCATGCCAGAGTAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGGAGTGTTGGGGCATATCTCCCAGGGGGATATGAGCCAGTTCGCCTGCCACA‑CAGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACt > 6:693975/1‑149 (MQ=255) cTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGa < 7:761213/148‑1 (MQ=255) ttAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAAc > 6:134836/1‑149 (MQ=255) ccATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATc > 6:1061733/1‑149 (MQ=255) ccATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGGGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTa < 2:679623/275‑1 (MQ=255) cATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATc > 7:808539/1‑148 (MQ=255) ttCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCAGA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCTTATCCCCGTACCGAGATAGGCCGCCCGAACCAGTTTTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCTGGTTAACGTCGCGGGAAAAGTCAACCGGACAATTCAGTGTATTTTAGAGCTTATCg > 2:500140/1‑275 (MQ=255) ccAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCgaga < 1:132078/279‑1 (MQ=255) ccAGAACAATCGGTTTCCGGTAACCCAGGATTGCACCACGCGTAGTGTTGGGTCATATCCCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCAACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGc < 2:84665/275‑1 (MQ=255) gagCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTAc > 7:807948/1‑148 (MQ=255) agCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCacac > 2:539097/1‑127 (MQ=255) aaTTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCgaga > 5:1002951/1‑149 (MQ=255) aTTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCCCCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTGTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGCAAACTCAACCGGACCATTCAGCGTCTTTTCGAGCTTATCGGCGAGATCata > 1:187399/1‑276 (MQ=255) ttGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGgcgc > 4:783104/1‑107 (MQ=255) ttGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGgcg < 1:35317/106‑1 (MQ=255) ttGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGAt > 8:508613/1‑148 (MQ=255) tGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATa < 8:718318/148‑1 (MQ=255) ggTTTCCAGGCACCCAGGCTTGCCACACGCGCAGTGTTGGGTCTTATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAgg < 6:843649/149‑1 (MQ=255) cAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCa > 5:462316/1‑149 (MQ=255) cccAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAAcc < 7:523729/148‑1 (MQ=255) cccAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCa > 6:675969/1‑149 (MQ=255) cccAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGt > 4:569769/1‑159 (MQ=255) cAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAgt > 6:235546/1‑149 (MQ=255) ggATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg < 2:569769/159‑1 (MQ=255) aTTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAgttgtt < 5:390874/149‑1 (MQ=255) aTTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAgttgtt < 5:670006/149‑1 (MQ=255) aTTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAgttgt > 7:433519/1‑148 (MQ=255) acacGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTa > 7:948481/1‑148 (MQ=255) cacGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTaa > 8:580298/1‑148 (MQ=255) acGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAgg < 6:1002951/149‑1 (MQ=255) acGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAg < 7:478705/148‑1 (MQ=255) gcgtcgtgtTCTGTCATATCTCCCAGGGGGATATGACCCAGTTCTCCTGCCTCA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACCGCGAAACCCATCCCCGTACCTAGATAGGCCGCCAGAACCAGTTGTTTCGGAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTTGCTGGAAAACTCAACCGGACAATTCAGCTTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGt < 1:124087/273‑1 (MQ=255) cAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGtt < 6:36168/149‑1 (MQ=255) tgtTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGtttt < 7:322287/148‑1 (MQ=255) tGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTcta < 8:802129/148‑1 (MQ=255) gggTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTctact > 5:593067/1‑149 (MQ=255) gggTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTctac < 8:343505/148‑1 (MQ=255) ggTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACTTCGCGGGAAAACTCAACCGACCAATTCAGCGTATTTTCGAGCTTAACGGCCAGATCATATAAATCCCCCCCTGTTAACGGCAGGTTAGGCCTatgaaaaa > 4:61840/1‑268 (MQ=255) ggTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGCGATCATATAAATCAGCCGCTGTTAACGGCAGGTTAGGCGTTGAaataa > 2:230747/1‑275 (MQ=255) cATATCCCCCTGGGAGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAgt < 7:668107/121‑1 (MQ=255) cATATCCCCCTGGGAGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAgt > 8:668107/1‑121 (MQ=255) tatCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTc > 7:245776/1‑148 (MQ=255) tatCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTg > 2:97526/1‑275 (MQ=255) atCCCCCTGGGAGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTccc > 6:715949/1‑149 (MQ=255) atCCCCCTGGGAGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTccc > 6:966183/1‑149 (MQ=255) tctcCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCa < 5:244236/149‑1 (MQ=255) tctcCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGc > 4:128305/1‑274 (MQ=255) ccAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAg < 6:498731/98‑1 (MQ=255) ccAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGGTCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGCAATAATGGTGCggtgt > 4:19866/1‑271 (MQ=255) cAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGgaga > 5:221703/1‑149 (MQ=255) aGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGgaga > 8:103058/1‑148 (MQ=255) aGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGagag > 5:350017/1‑149 (MQ=255) aGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGagag > 5:916003/1‑149 (MQ=255) | CGAGAGTCTCGCGTGGGAAGGCGGGCATATCCATCACGCCACCGCCCAGGATCACCGCATCGGGATCGAACAGATTAATGCTGGTGGCAATGGCCCGTGCCGCGTTTTCAAGCAGACTCTGGACGAAAGGGGCGTTTTCCGCATGGACGAAAAGATCGCGCAATGGGTAATTTCGGGGCTGTTGTTCGTACCAGCGTCTTAGCGCCATTCCAGAGCAATTGGTTTCCAGGCACCCAGGATTGCCACACGCGCAGTGTTGGGTCATATCTCCCAGGGGGATATGACCCAGTTCGCCTGCCACA‑CCGTGTGCACCCGTCCACGGCGCACCGTTCATCCACACTGCGAACCCCATCCCCGTACCGAGATAGGCCGCCAGAACCAGTTGTTGCGTAAGGCGGTTTTCTACTACGTCCCAGGAGAGTTGCAGGTTAACGTCGCGGGAAAACTCAACCGGACAATTCAGCGTATTTTCGAGCTTATCGGCGAGATCATATAAATCCGCCGCTGTTAACGGCAGGTTAGGCGTAGAAATAATGGTGCGTTTATCTTT > NC_000913/4307022‑4307571 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |