New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4369146 =	72 (0.620)	4 (0.040)	4/240	NT	5.7%	intergenic (+6/+10)	fxsA/yjeH	suppressor of F exclusion of phage T7/putative transporter
	?	NC_000913	4369185 =	65 (0.600)					coding (1228/1257 nt)	yjeH	putative transporter

TCGACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4369303‑4369146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcgtttTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCT  >  NC_000913/4369185‑4369330                                                                                                                                                                                                                                                                                                                  TCGACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAAT                                                                                                                                                             >  1:285621/1‑149  CGACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAAT                                                                                                                                                             <  3:804116/148‑1   GACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATC                                                                                                                                                            <  1:553355/148‑1   GACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATC                                                                                                                                                            >  2:553355/1‑148    ACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCC                                                                                                                                                           <  4:534885/148‑1      TACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGC                                                                                                                                                        <  2:597289/149‑1      TACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGC                                                                                                                                                        <  2:652652/149‑1      TACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGG                                                                                                                                                         >  3:153254/1‑148         TGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTGCTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTT                                                                                                                                                     >  1:354255/1‑149         TGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTT                                                                                                                                                     >  1:839259/1‑149          GGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCGGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTTT                                                                                                                                                    <  2:892315/149‑1           GCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTTT                                                                                                                                                    <  3:608537/148‑1                                                                          GCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTT                                                                                                                                                     >  4:800063/1‑84                                                                          GCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTT                                                                                                                                                     <  3:800063/84‑1                                                                                                                  AACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAA                                                                <  4:970071/129‑1                                                                                                                  AACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAA                                                                >  3:970071/1‑129                                                                                                                         AACGCCGGAAAATGGCATAACCACATAATCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCC                                                                          >  3:180064/1‑112                                                                                                                         AACGCCGGAAAATGGCATAACCACATAATCCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCC                                                                          <  4:180064/112‑1                                                                                                                                                      CCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTA        <  1:892315/149‑1                                                                                                                                                      CCGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTT         <  3:507850/148‑1                                                                                                                                                       CGGCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTAC       >  1:254186/1‑149                                                                                                                                                         GCGTTTTTCGTTTTGGCAGCAACCGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATCGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACA      >  4:324045/1‑148                                                                                                                                                         GCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCTGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATCATTTACA      >  3:910770/1‑148                                                                                                                                                         GCGTTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACA      <  3:971074/148‑1                                                                                                                                                            TTTTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCT  >  2:286971/1‑149                                                                                                                                                                                                                                                                                                                  TCGACTACTGGCGGTGGTTGGCGGGCTGTTATGCGTTCTGTTACTGGCAATGGTCGGCTGGAAAAGTCTCTATGCGCTGATCATGCTGGCGGGGTTATGGCTGTTGCTGCCAAAACGAAAAACGCCGGAAAATGGCATAACCACATAATCCGGCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4369303‑4369146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcgtttTTCGTTTTGGCAGCAACAGCCATAACCCCGCCAGCATGATCAGCGCATAGAGACTTTTCCAGCCGACCATTGCCAGTAACAGAACGCATAACAGCCCGCCAACCACCGCCAGTAGTCGATAACGTCCTTGCAATAATTTACAGCCT  >  NC_000913/4369185‑4369330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.