New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1616905	109 (0.790)	7 (0.050)	6/490	11.5	6.4%	intergenic (+27/‑123)	yneK/ydeA	uncharacterized protein/arabinose efflux transporter, arabinose‑inducible
	?	NC_000913	= 1616917	99 (0.740)					intergenic (+39/‑111)	yneK/ydeA	uncharacterized protein/arabinose efflux transporter, arabinose‑inducible
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1616772‑1616905 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctctgacgcTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGA  <  NC_000913/1616917‑1616644                                                                                                                                                                                                                                                                                                                                                                                                                          CGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTC                                                                                                                                                                                                                                                                                          >  1:130117/1‑128     AAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGAC                                                                                                                                                                                                                                                                                      <  3:130117/128‑1                                                 CTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGGGGTCTGACAGGGGAGCGAGGCATGTTTTTCACCAGGTCTTCGTGGGTAACTTTTGGCGGGGTTTCATT                                                                                                                        >  2:16022/1‑242                                                  TGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGGGGCCTGTTTTTACTCAGGTCTTCGGGAGTGACTTTTGGCGGTGTTTCGTTTTTTTCAAATAGTTTGAGGGTCCTGCGCTCCTTTTGT                                                                                   >  2:402566/1‑278                                                                                                       ATTAAACCGTGATGTTACCGACTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGTCGGTGTTTCATTTTTTAAAAACAGTTTGAGGGTCCGGCGGGCCATCTGTTTGATAATTTTATCATAACTTAATGATGCTTCCATCATCACGTgctcaaa                                 >  3:31807/1‑268                                                                                                       ATTAAACCGTGATGTTACCGACTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCG                                                                                                                                                                           >  1:319813/1‑137                                                                                                           AACCGTGATGTTACCGACTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGC                                                                                                                                                                       <  3:319813/137‑1                                                                                                                TGATGTTACCGACTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTT                                                                                                                                                                  >  2:452185/1‑137                                                                                                                 GATGTTACCGTCTCTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTT                                                                                                                                                                 <  4:452185/137‑1                                                                                                                         cgtttcttttagcCTGATGGTTTCATGCGTCAGAGAGTCGTTAACATAACTGTTTAAGAACGTTCAGGGAGGTCTTGGGTTTTGGCGGTTGCTGGTATAGGTGGTCTGACAGGGGAGCGATGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGTGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCAT            <  4:144978/265‑1                                                                                                                             TCTCTGACGCTGATTCTTTCACGCGTAAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCAT            <  1:143682/274‑1                                                                                                                              CTCTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAA          <  3:410859/275‑1                                                                                                                                CTGACGCTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTG                                                                                                                                     >  2:51856/1‑150                                                                                                                                 TGACGCTGATTCTTGCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGG                                                                                                                                    <  4:51856/150‑1                                                                                                                                   ACGCGGATTCTTTCACGCGTCAGAGAGTCTGTAACATCACGGTTTAATGTCGTTCAGGGAGGTCTGGCGTTTTGGAGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGA  <  2:361748/278‑1                                                                                                                                    CGCTGATTCTTTCACGCCTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGGCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCGTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGT    <  1:71539/275‑1                                                                                                                                                                                                                                                                                                                                                                                                                          CGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1616772‑1616905 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctctgacgcTGATTCTTTCACGCGTCAGAGAGTCGGTAACATCACGGTTTAATGACGTTCAGGGAGGTCTGGCGTTTTGGCGGTTGCGGGTATAGGTGGTCTGACAGGGGAGCGAGGCCTGTTTTTCACCAGGTCTTCGTGAGTAACTTTTGGCGGTGTTTCATTTTTTACAAACAGTTTGAGGGTCCTGCGCGCCATATGTTTGATAATTTTATCATCACTTAATGATGCTGGCATCAACACGTCATTCAAATCACTTTCATTGGGATTCATAAATTGGTGA  <  NC_000913/1616917‑1616644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.