| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2118562 = | 161 (0.940) | 10 (0.060) | 9/242 | NT | 6.5% | noncoding (97/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2118594 = | 135 (0.840) | noncoding (129/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
AGCGAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2118715‑2118562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCCA > NC_000913/2118594‑2118741 AGCGAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCAT > 1:13520/1‑149AGCGAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCAT > 2:747171/1‑149 GCGAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATC > 3:817690/1‑149 CGAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCA < 1:1300079/149‑1 GAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAG < 1:1134914/149‑1 GAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAG > 2:77957/1‑149 GAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAG > 1:1380916/1‑149 AAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGG > 2:834662/1‑149 CTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCC < 2:1549824/87‑1 CTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCC > 1:1549824/1‑87 GGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAG > 3:1512751/1‑70 GGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAG < 4:1512751/70‑1 GCCTGATAAGACGCGTCTGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGCTTTACGCCGCATCCGGCAACCGTTGTCGGAAGCGAAAACAGCAACTCACCCCGCCCGTGAAAGCATTTTCATTTTT > 4:1225943/1‑149 GCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTT > 3:1019708/1‑149 CCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTT > 4:1418395/1‑149 CTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAA < 2:154539/102‑1 CTGATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAA > 1:154539/1‑102 ATAAGACGCGTCAGCGTCGCATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCT > 4:961645/1‑149 ATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCA < 3:1418395/149‑1 CAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACT > 2:313679/1‑149 AGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTT > 2:561931/1‑149 GGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTC > 2:1129396/1‑149 GGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTC > 1:1111516/1‑149 GCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCC < 3:408064/149‑1 GCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCC < 3:640540/149‑1 GCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCC < 2:293333/149‑1 GCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCC < 4:1080844/149‑1 GCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCC < 1:1159473/149‑1 CCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCCA > 1:316374/1‑149 AGCGAAAAAATGAAAATGCTTTTACGGGCGGGGTGAGTTGCTGTTTTCGGTTCCGACAACGGTTGCCGGATGCGGCGTAAAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGACCTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2118715‑2118562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGACAAAACTGACGCTTCACTTCCA > NC_000913/2118594‑2118741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |