BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4467063 =	169 (0.990)	3 (0.020)	3/248	NT	1.7%	coding (184/948 nt)	treR	trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
*	?	NC_000913	4467094 =	185 (1.120)	3 (0.020)	3/248	NT	1.7%	coding (153/948 nt)	treR	trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
Rejected: Frequency below/above cutoff threshold.

Only 100 of 211 total aligned reads displayed.

CTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGATGGTCAGCCGATTTT  >  NC_000913/4466948‑4467242

cTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGa                                                                                                                                                     <  1:65667/149‑1 (MQ=255)

 tttCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGaa                                                                                                                                                    >  1:1155825/1‑149 (MQ=255)

 tttCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGaa                                                                                                                                                    <  3:303201/149‑1 (MQ=255)

  ttCCATCATGATTGGGTCGTAACCTTGTTCATAGGGCGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAg                                                                                                                                                   <  1:1504954/149‑1 (MQ=255)

  gcggcgtggggaaatctacagtttcccgggtgctgaataacgaaagcggcgtgagccagctcacccgcgagcgtgttgaagcagtgatgaatcagcatggattttccccttccCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAg                                                                                                                                                   >  4:29723‑M1/114‑149 (MQ=255)

   tCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgg                                                                                                                                                  <  4:520134/149‑1 (MQ=255)

   tCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgg                                                                                                                                                  <  4:1041402/149‑1 (MQ=255)

   tCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgg                                                                                                                                                  <  2:605753/149‑1 (MQ=255)

   tCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgg                                                                                                                                                  <  2:1576853/149‑1 (MQ=255)

     catcatGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGAATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGAGCACTTTATCGCTATGCGCACGCATAGCGCGCGCAGAGCGGGAAtggg                                                                                                                                                <  2:634505/149‑1 (MQ=255)

      atcatGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCTACGCATAGCGCGCGCAGAGCGGGAAGGGGa                                                                                                                                               >  3:425812/1‑149 (MQ=255)

      atcatGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGa                                                                                                                                               >  1:1078611/1‑149 (MQ=255)

      atcatGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGa                                                                                                                                               >  1:751490/1‑149 (MQ=255)

       tcatGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGaa                                                                                                                                              >  1:390144/1‑149 (MQ=255)

       tcatGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGaa                                                                                                                                              >  1:665929/1‑149 (MQ=255)

        tggggaaatctacagtttcccgggtgctgaatagcgaaagcggcgtgagccagctcacccgcgagcgtgttgaagcagtgatgaatcagcatggattttccccttccCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAgg                                                                                                                                                  <  3:992808‑M1/37‑1 (MQ=255)

            aTTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATcc                                                                                                                                         >  4:557418/1‑149 (MQ=255)

                 gTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCt                                                                                                                                    >  4:704557/1‑149 (MQ=255)

                  tCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTg                                                                                                                                   >  4:261066/1‑149 (MQ=255)

                    gTAACCTTGTTCATAGTACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGAt                                                                                                                                 <  3:995803/149‑1 (MQ=255)

                         cTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtcatc                                                                                                                            >  1:1236424/1‑149 (MQ=255)

                         cTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtcatc                                                                                                                            >  3:1215448/1‑149 (MQ=255)

                         cTTGTTCATAGAACGCCGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtcatc                                                                                                                            <  3:1337884/149‑1 (MQ=255)

                          ttGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGGGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtcatca                                                                                                                           <  2:434255/149‑1 (MQ=255)

                                aTAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCtt                                                                                                                     <  2:1111303/149‑1 (MQ=255)

                                  aGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCa                                                                                                                   >  3:1006822/1‑149 (MQ=255)

                                   gAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCaa                                                                                                                  <  4:852914/149‑1 (MQ=255)

                                    aaCGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAac                                                                                                                 <  1:346871/149‑1 (MQ=255)

                                    aaCGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAac                                                                                                                 <  2:1078611/149‑1 (MQ=255)

                                      cGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCGTGCTGATTCATCACTGCTTCAacac                                                                                                               <  1:434999/149‑1 (MQ=255)

                                              gcaTGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCgg                                                                                                       <  4:99022/149‑1 (MQ=255)

                                                aTGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑Gt                                                                                                    <  2:1236424/149‑1 (MQ=255)

                                                aTGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑Gt                                                                                                    >  2:946810/1‑149 (MQ=255)

                                                    tttGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGc                                                                                                <  3:1385768/149‑1 (MQ=255)

                                                    tttGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGc                                                                                                >  1:242147/1‑149 (MQ=255)

                                                    tttGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGc                                                                                                >  4:1505360/1‑149 (MQ=255)

                                                       gAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTgg                                                                                             <  3:586529/149‑1 (MQ=255)

                                                       gAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTgg                                                                                             <  1:309964/149‑1 (MQ=255)

                                                          cGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCCAGCTc                                                                                          <  3:72916/149‑1 (MQ=255)

                                                              gagaTTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCAt                                                                                                                                       >  2:343530/1‑101 (MQ=255)

                                                              gagaTTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCAcgc                                                                                      >  1:549579/1‑149 (MQ=255)

                                                               agaTTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCAcgcc                                                                                     <  2:489008/149‑1 (MQ=255)

                                                                 aTTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAACTCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTCGCTCAcgccgc                                                                                   <  4:144961/149‑1 (MQ=255)

                                                                 aTTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCAcgccgc                                                                                   >  3:1425333/1‑149 (MQ=255)

                                                                  ttttCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCCAGCTCAcccgcga                                                                                  <  4:1364603/149‑7 (MQ=255)

                                                                  ttttCTGACAACGAACCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTAGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCt                                                                                  <  3:1354569/149‑1 (MQ=255)

                                                                     tCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTc                                                                               <  2:476944/149‑1 (MQ=255)

                                                                      cTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCg                                                                              <  2:665929/149‑1 (MQ=255)

                                                                       tGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCGTAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGCGTGAGCCAGCTCAcccgc                                                                                    >  1:732220/1‑139 (MQ=255)

                                                                       tGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCGTAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGGCGTGAGCCAGCTCAcccgc                                                                                    <  2:732220/143‑5 (MQ=255)

                                                                       tGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGt                                                                             >  2:1275030/1‑149 (MQ=255)

                                                                         aCAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTa                                                                           <  4:1424357/149‑1 (MQ=255)

                                                                           aaCGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTAtt                                                                         >  4:139434/1‑149 (MQ=255)

                                                                            aCGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTc                                                                        <  3:831922/149‑1 (MQ=255)

                                                                             cGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCa                                                                       <  3:557418/149‑1 (MQ=255)

                                                                              gAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTg                                                                                                   >  1:210908/1‑120 (MQ=255)

                                                                              gAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTg                                                                                                   <  2:210908/120‑1 (MQ=255)

                                                                                 tCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCAt                                                                                                                                       >  4:389794/1‑82 (MQ=255)

                                                                                 tCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCAc                                                                   >  4:774446/1‑149 (MQ=255)

                                                                                    aGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATtcat                                                                                                                             >  3:74635/1‑89 (MQ=255)

                                                                                     gACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCgg                                                               <  4:229039/149‑1 (MQ=255)

                                                                                          gTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATc                                                                                                                                          <  3:497391/70‑1 (MQ=255)

                                                                                          gTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAAc                                                          >  1:159837/1‑149 (MQ=255)

                                                                                             aCAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGt                                                       <  2:242147/149‑1 (MQ=255)

                                                                                             aCAATGATGGCGACCACTATATCGCTTTGCTAACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGt                                                       >  4:672273/1‑149 (MQ=255)

                                                                                              cAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTa                                                      <  3:1496974/149‑1 (MQ=255)

                                                                                                 tgatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAt                                                   <  1:720469/149‑1 (MQ=255)

                                                                                                 tgatgGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGAt                                                   >  1:982198/1‑149 (MQ=255)

                                                                                                         aCCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGc                                                                                                <  2:1441837/96‑1 (MQ=255)

                                                                                                          ccACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcg                                          >  1:1466057/1‑149 (MQ=255)

                                                                                                          ccACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcg                                          >  3:1569038/1‑149 (MQ=255)

                                                                                                          ccACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcg                                          >  1:239173/1‑149 (MQ=255)

                                                                                                           cACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCAGGGAAACTGTAGATTTCCCCAcgc                                         <  4:1208143/149‑1 (MQ=255)

                                                                                                              tttATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgccgc                                      >  2:554837/1‑149 (MQ=255)

                                                                                                              tttATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgccgc                                      >  1:563553/1‑149 (MQ=255)

                                                                                                              tttATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCAcgccgc                                      >  1:1494441/1‑149 (MQ=255)

                                                                                                                 aTCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTa                                   >  3:657720/1‑149 (MQ=255)

                                                                                                                 aTCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTa                                   >  1:615526/1‑149 (MQ=255)

                                                                                                                  tCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTaa                                  <  1:595638/149‑1 (MQ=255)

                                                                                                                  tCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTaa                                  >  2:8262/1‑149 (MQ=255)

                                                                                                                   CGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAg                                 >  4:657720‑M1/1‑149 (MQ=255)

                                                                                                                     CTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAgcg                               <  2:361367‑M1/149‑1 (MQ=255)

                                                                                                                          cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCa                                                                                         <  2:1504576/86‑1 (MQ=255)

                                                                                                                          cccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGa                          <  2:287652/149‑1 (MQ=255)

                                                                                                                           ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCTCTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGat                         >  2:1363398/1‑149 (MQ=255)

                                                                                                                           ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTa                                                      <  1:452912/120‑1 (MQ=255)

                                                                                                                           ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGat                         >  1:281333/1‑149 (MQ=255)

                                                                                                                           ccACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGat                         >  1:1304514/1‑149 (MQ=255)

                                                                                                                            cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTc                                                                                                           <  4:118700/67‑1 (MQ=255)

                                                                                                                            cACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTc                                                                                                           >  3:118700/1‑67 (MQ=255)

                                                                                                                                 aTAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCttt                   <  1:937287/149‑1 (MQ=255)

                                                                                                                                   aGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGa                 >  2:588613/1‑149 (MQ=255)

                                                                                                                                   aGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGa                 <  4:1215448/149‑1 (MQ=255)

                                                                                                                                   aGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGa                 <  2:1252714/149‑1 (MQ=255)

                                                                                                                                    gcgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGAt                <  2:879807/149‑1 (MQ=255)

                                                                                                                                    gcgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGAt                <  4:94980/149‑1 (MQ=255)

                                                                                                                                     cgcgcgcAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGATg               <  3:675762/149‑1 (MQ=255)

                                                                                                                                              agcgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGa                 <  4:188245‑M2/134‑1 (MQ=255)

                                                                                                                                                cgGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGATGGTCAGCCGAtt    <  1:1058811‑M2/147‑1 (MQ=255)

                                                                                                                                                  ggAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGATGGTCGGCCGAtttt  <  1:1401980/149‑1 (MQ=255)

CTTTCCATCATGATTGGGTCGTAACCTTGTTCATAGAACGCTGGCAGCATGGTTTGAACGGCGAGATTTTCTGACAACGAATCCAGACGGGTAACAATGATGGCGACCACTTTATCGCTTTGCCCACGCATAGCGCGCGCAGAGCGGGAAGGGGAAAATCCATGCTGATTCATCACTGCTTCAACACGCTCGCGG‑GTGAGCTGGCTCACGCCGCTTTCGTTATTCAGCACCCGGGAAACTGTAGATTTCCCCACGCCGCTTAAGCGCGCGATATCTTTGATGGTCAGCCGATTTT  >  NC_000913/4466948‑4467242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.