| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3358749 = | 150 (1.060) | 4 (0.030) | 4/510 | 12.8 | 2.6% | coding (4025/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | = 3359295 | 150 (1.070) | coding (98/1419 nt) | gltD | glutamate synthase, 4Fe‑4S protein, small subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCTCGGTGATAAGACCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3359025‑3358749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGGTATGCTGCACATGCTC < NC_000913/3359295‑3359021 TGCTCGGTGATAAGGCCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTAATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCG < 1:521311/275‑1TGCTCGGTGATAAGACCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCG < 1:546214/275‑1 GCTCGGTGATAAGACCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTAAGCACGACGAAAAGTTCACCCGCGCGGC > 2:171008/1‑276 GCTCGGTGATAAGACCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTATACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGG > 1:182419/1‑275 CTCGTTTATAAGACCACTCATATGCTCTTCATGCATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGGC < 2:400636/275‑1 tgggggtTAAGACAACGCAGATGCGCTTCAGGGGTCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGGC < 1:382402/267‑1 ATAAGACCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCACTGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCTAAACCTTCACCCGCGCGGCTtgccg > 3:679743/1‑269 ACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGTTGATAGCACCGGAGTTACCCATGCCGAAACTTTCCCCCGCGCTGCTgccggcatacaaa > 1:242364/1‑261 CACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGGCTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAACCATTCTGACTCCTTGTTGCTACCCCTTACTTCGCCTTCCCGCCCCACTCAGCTGtc > 4:33520/1‑274 GTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGGCTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGAC < 2:33520/276‑1 CTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGG > 1:667620/1‑260 CTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCCCTGAGAGCCGGTATGCTGCACATGCT > 2:577207/1‑275 CTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATGTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGGTATGCTGCACATGCTC < 2:525913/276‑1 CTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATGGTTGCTACACCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGGTATGCTGCACATGCTC < 2:677694/276‑1 CTCGTAAATTTCAACAAACGCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGGTATGCTGCACATGCTC < 2:488940/276‑1 CTCGTAAAGTTCAACAAACTGAATTTTGCGGATCGTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACACCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCGGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGGTATGCTGCACATGCTC < 4:161442/276‑1 TGCTCGGTGATAAGACCACGCAGATGCTCTTCATGGATCGCCAGAGCGTCAACGCTTAAGACCTCGACCAGTTCCGGGTTAACGCGTTTGCGGAAATCGCCGCTTTCATCGAGAACGTAAGCGAAACCGCCGGTCATGCCCGCACCGAAGTTAACGCCGGTTTTACCCAGAATGCAGACGATACCACCCGTCATATATTCACAACCGTTGTCGCCAATGCCTTCTACCACGGTGATAGCACCGGAGTTACGCACGCCGAAACGTTCACCCGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3359025‑3358749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcTCGTAAATTTCAACAAACTCAATTTTGCGGATCTTCAGCGGTTTCTTTGGCGGATCAACGCGCTGCAGGTCGATAAATTGATAAACATTCTGACTCATTGTTGCTACCCCTTACTGCGCCTGCACGCGCAACTCAGCTGCGCTACGACTACGGTGACCCAGCAGTGCTTTTACATCACTGGACTTCGGTTTAACCAGCGCAAATTTAGTGGCGAAGGTTGACCAGTTCGCCAGAATCTCTTCACCGCGCTGAGAGCCGGTATGCTGCACATGCTC < NC_000913/3359295‑3359021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |