New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4425590 =178 (0.940)3 (0.020) 3/246 NT 1.7% coding (71/315 nt) priB primosomal protein N
?NC_000913 4425637 = 185 (1.020)coding (118/315 nt) priB primosomal protein N
Rejected: Frequency below/above cutoff threshold.

TGAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4425743‑4425590
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggaaGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  >  NC_000913/4425637‑4425781
                                                                                                                                                                                                                                                                                                           
TGAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTG                                                                                                                                                        <  1:1488201/149‑1
 GAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       <  4:769479/149‑1
 GAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       <  4:1342761/149‑1
 GAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       <  3:1578279/149‑1
 GAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGCGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       <  3:1409989/149‑1
 GAACGGTTAAGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       <  1:6729/149‑1
  AACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGCTTCTCAAGCACGAACTGGCAGTGAt                                                                                                                                                      <  2:1330274/149‑2
     gggTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGCCACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAA                                                                                                                                                   <  1:556474/146‑1
     GGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAA                                                                                                                                                   <  3:995413/149‑1
                    GACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAA                                                                                                                                                   >  1:1345772/1‑134
                    GACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAA                                                                                                                                                   <  2:1345772/134‑1
                      CCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       >  4:274676/1‑128
                      CCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       <  3:274676/128‑1
                                     TAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTTAAGCACGAACTGGCAGTGA                                                                                                                                                       <  3:1012873/113‑1
                                     TAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGA                                                                                                                                                       >  4:1012873/1‑113
                                                                                                        GGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATA                                                >  3:794128/1‑149
                                                                                                             CCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGT                                           >  1:614479/1‑149
                                                                                                              CTCCTGCACAGAACGACGCTCAAGCACGAACTGGCAGTGAGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTT                                          >  4:257528/1‑149
                                                                                                                                                  GTGAGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGA      <  2:614479/149‑1
                                                                                                                                                    GAGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACT    >  2:960489/1‑149
                                                                                                                                                    GAGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACT    >  4:147787/1‑149
                                                                                                                                                     AGGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTG   >  1:1099384/1‑149
                                                                                                                                                     AGGAAGCCGGCTTTCACCGGCAAGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGCCTG   <  3:1059158/149‑1
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  <  3:27623/149‑1
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  <  3:156659/149‑1
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  >  2:1320377/1‑149
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  <  4:1467233/149‑1
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  >  3:1240381/1‑149
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTC                                                                          >  1:1382945/1‑77
                                                                                                                                                      GGAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTC                                                                          <  2:1382945/77‑1
                                                                                                                                                       GAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCAT                          >  1:727395/1‑124
                                                                                                                                                       GAAGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCAT                          <  2:727395/124‑1
                                                                                                                                                                                                                                                                                                           
TGAACGGTTATGCGACTGCCGACCGTTATACTGTGAGTAATGGCCTGGTTTTCGTGTCCGCTAACAATAACGGGCATTTGACACCACGCCTGCCGGTGAAAGCCGGCTTCCTCCTGCACAGAACGATGCTCAAGCACGAACTGGCAGTGAGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4425743‑4425590
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggaaGCCGGCTTTCACCGGCAGGCGTGGTGTCAAATGCCCGTTATTGTTAGCGGACACGAAAACCAGGCCATTACTCACAGTATAACGGTCGGCAGTCGCATAACCGTTCAGGGGTTCATTTCATGCCACAAGGCAAAGAACGGACTGA  >  NC_000913/4425637‑4425781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.