New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4415961	NA (NA)	11 (0.040)	8/246	NT	NA	noncoding (4/34 nt)	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4415991	NA (NA)					noncoding (34/34 nt)	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGTTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4415815‑4415961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACAACC  <  NC_000913/4415991‑4415839                                                                                                                                                                                                                                                                                                              TGTTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGC                                                                                                                                                         <  1:1830026/149‑1   acAGATACGCGCGGCGCCGCACGGTTGTCAGAGCAGACCCAGAATGATTTATTGCTGCGGGTGCCGGGGGCCGTGTGTGTGTAAGCGTATACGACTGAGGCGACGCTGGCTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                                                                       >  4:863418/3‑149   TTAGATACGCGTGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                                                                       >  1:1319190/1‑149   TTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                                                                       >  1:1030272/1‑149   TTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                                                                       <  1:279192/149‑1   TTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                                                                       >  1:886718/1‑149   TTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                                                                       <  4:428767/149‑1     AGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGta                                                                                                                                                     <  1:418128/149‑3     AGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGGGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGA                                                                                                                                                     >  2:48436/1‑149                      TACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTT                                                                                                                                    <  2:1726956/149‑1                          GTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCC                                                                                                                                <  4:1715549/149‑1                          GTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCGAGCGCCTTGTCC                                                                                                                                <  2:1689998/149‑1                                AGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTA                                                                                                                          <  4:757213/149‑1                                AGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTA                                                                                                                          <  3:1124892/149‑1                                        TCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCT                                                                                                                           <  2:1583082/140‑1                                                                                    TAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCC                                                                                                                                <  1:625573/91‑1                                                                                    TAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCC                                                                                                                                >  2:625573/1‑91                                                                                                     TGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTT                                                                                                                                    <  3:1118613/70‑1                                                                                                     TGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTT                                                                                                                                    >  4:1118613/1‑70                                                                                                                              ATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAA                            >  4:1188221/1‑149                                                                                                                                                  AGGCCGGACAAGGCGCTCGCGCCGCATCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGA                 <  1:1583082/140‑1                                                                                                                                                     CCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACA     >  4:2032993/1‑149                                                                                                                                                      CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACAA    >  2:2238120/1‑149                                                                                                                                                      CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACAA    >  2:1624533/1‑149                                                                                                                                                       GGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTCACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACAAC   <  2:1314451/149‑1                                                                                                                                                        GATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACAACC  <  1:14275/149‑1                                                                                                                                                                                                                                                                                                              TGTTAGATACGCGCGGCGGCGTACGGTTGTCAGAGCAGATCCAGAATGATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4415815‑4415961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTCCCCCCGTCGCCCGCAGCAATAAATCATTCTGGATCTGCTCTGACAACC  <  NC_000913/4415991‑4415839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.