New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3767365541 (3.860)23 (0.160)
+ACCTGT		 3/470 13.0 4.1% pseudogene (145/945 nt) rhsJ Rhs‑family protein
?NC_000913 3767366 = 543 (3.730)pseudogene (146/945 nt) rhsJ Rhs‑family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3767091‑3767365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATG  >  NC_000913/3767366‑3767524
                                                                                                                                                                                                                                                                                   ||||||                                                                                                                                                               
CGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCA                                                                                                                                                                      >  4:542929/1‑276
 gtgtttgCCTGTTTTAGGTATTATGTTGTAAAAGTTTGATGACAATGAAATTTTAACTTCCGCGATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCAAAGTGGGGGAGTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  4:671575/269‑1
 GCTTCTGCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATTAAATTATAACTGCCGCTATTGATAAGCTGAATCGTTCAGAGCGTGAGTTGCCTAAGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAACTCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  2:29858/276‑1
 GCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  2:326802/276‑1
 GCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGAGGACAATGAAATTATAACTTCCGCTATTGGTAAGCTGAATCTTTCATAGAGTGAGTGGCCTATGCACAGTGGGGGATTACCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTTACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  2:594730/276‑1
 GCTACTTCCTGTTTTAGATACTAGGTGGTAAAAGTTTGATGACAATGAAATTATAACGTCCGCTATTGAGAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  2:278753/276‑1
 GCTACTTCCTGTTTTAGAGACTATTTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  2:139322/276‑1
  CTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     >  2:210524/1‑275
  CTACTTCCTGTTTTAGATAATATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGGGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTAGCTGACAGGGTGAGTGAAGAAAGCCGCCGCTGGCTGGCATGGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACGCGCCGGCGCGAAAAATCCAC                                                                                                                                                                     >  2:361595/1‑275
  CTACTTCCTGTTTTAAATATTATGTTGTAAAAGTTTGATGAAAATGAAATTATAACTTCCGCTATTGGTAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  3:340461/275‑1
  CTAATTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCACTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  1:289895/275‑1
      TTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTG                                                                                                                                                                  <  3:462740/274‑1
       TCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTA                                                                                                                                                                <  3:575373/275‑1
        CCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCTGGCAAAACCAACCCGTAC                                                                                                                                                               >  4:557660/1‑275
          TGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACaac                                                                                                                                                            >  4:186133/1‑273
             TTTAGGTAGTATGTTGTACAAGTTTTATGACAATGAAATTATAACTGCCGCTTGTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGGGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  4:663176/264‑1
                         GTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTAGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  4:519498/252‑1
                                       ATGGCAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  2:199809/238‑1
                                           CAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAC                                                                                                                                                                     <  3:53802/234‑1
                                                                                                                                                  GGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACC                                                                                                                                                                    >  1:219187/1‑132
                                                                                                                                                      GGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTA                                                                                                                                                                <  3:219186/132‑1
                                                                                                                                                                     tagggccgGGGTGAGGGGGGAGAGCCGGCGCTGGCTGGCATCGTGCGGCGTGGCCGTGGAGGAGATGAAAAACGGGATGGACCCGGTGTACAGTGCGGCGCGAAAAATCCACCTGTACCTGTACCACGGCGACCATCGCGGCCTGCCGCTTGCGCTCATCAGCACGGAGGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATG  <  4:582429/267‑1
                                                                                                                                                                                         AAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCTGTACCACTGCGACCATCGCGGTCTGCCGCTGGCGCTCATCAGCACGGAAGTGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGT     >  2:582429/1‑252
                                                                                                                                                                                                                                                                                   ||||||                                                                                                                                                               
CGCTACTTCCTGTTTTAGATACTATGTTGTACAAGTTTGATGACAATGAAATTATAACTTCCGCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3767091‑3767365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATG  >  NC_000913/3767366‑3767524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.