New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2151683	NA (NA)	6 (0.090)	5/156	NT	NA	noncoding (10/28 nt)	REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 2151691	NA (NA)					noncoding (18/28 nt)	REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences

TACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2151574‑2151683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggttgaaGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGGTGAC  <  NC_000913/2151691‑2151593                                                                                                                                                                                                                   TACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACT                                                                                                               >  1:521414/1‑100     ATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCG                                                                                                           >  2:129341/1‑100     ATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCG                                                                                                           <  2:1286804/100‑1       TGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGT                                                                                                         >  2:1758249/1‑100       TGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGT                                                                                                         <  1:536829/100‑1        GATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTT                                                                                                        <  1:74590/100‑1        GATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGT                                                                                                         >  1:1273349/1‑99        GATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGATATATTTATTGTTTAAACTGACGGT                                                                                                         >  2:50259/1‑99         ATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG                                                                                                       <  1:274749/100‑1          TCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTG                                                                                                       <  1:1564314/99‑1           CCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA                                                                                                     >  2:726205/1‑100                            TCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAGACAACAATTCAACCGC                                                                                    <  1:2051212/100‑1                            TCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAGACAACAATTCAACCGC                                                                                    <  1:825473/100‑1                             CCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAGACAACAATTCAACCGCC                                                                                   <  1:583320/100‑1                                AAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAGACAACAATTCAACCGCCAGT                                                                                <  2:845583/100‑1                                 AAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAGACAACAATTCAACCGCCAGTT                                                                               <  2:951552/100‑1                                      GAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAAC                                                                          <  2:322272/100‑1                                                                                                    TGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            >  1:1758262/1‑100                                                                                                    TGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            >  2:1391815/1‑100                                                                                                    TGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            <  2:846385/100‑1                                                                                                    TGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            >  2:1573872/1‑100                                                                                                    TGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            <  1:1493168/100‑1                                                                                                    TGGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            <  1:1493222/100‑1                                                                                                    TGGCGGTTGAAGACAAAAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTG            <  2:2031978/100‑1                                                                                                     ctCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGG           <  2:874661/98‑1                                                                                                     GGCGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGG           >  1:57068/1‑100                                                                                                       CGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGAg         >  1:874664/1‑99                                                                                                       CGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGAT         <  1:809658/100‑1                                                                                                       CGGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGA          <  1:1631326/99‑1                                                                                                        GGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATA        <  2:1439045/100‑1                                                                                                        GGTTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGAT         <  1:1660382/99‑1                                                                                                          TTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGG      <  2:39729/100‑1                                                                                                          TTGAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGG      <  2:1819179/100‑1                                                                                                            GAAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGGTG    <  1:142133/100‑1                                                                                                             AAGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGGTG    <  2:700065/99‑1                                                                                                              AGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGGTGAC  >  2:64445/1‑100                                                                                                                                                                                                                   TACCATTGATCCTTTATTGGTCACCTATCCAAAAGAAGAAGCCGACGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2151574‑2151683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggttgaaGACAACAATTCAACCGCCAGTTTAAACAATAAATATAACGGCTGATTAGCGAACTAATTTTGCTCTTAGCTCGTCGGCTTCTTCTTTTGGATAGGTGAC  <  NC_000913/2151691‑2151593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.