New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3512467 =	NA (NA)	8 (0.110)	6/162	NT	NA	intergenic (‑123/+167)	yhfZ/trpS	putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase
	?	NC_000913	3512487 =	NA (NA)					intergenic (‑143/+147)	yhfZ/trpS	putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase

CCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3512571‑3512467 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggtttCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTT  >  NC_000913/3512487‑3512585                                                                                                                                                                                                              CCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCC                                                                                                          >  2:431581/1‑100  CTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCG                                                                                                         <  1:2012900/100‑1  CTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCG                                                                                                         <  1:2012825/100‑1  CTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCG                                                                                                         <  1:1359262/100‑1   TACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCGG                                                                                                        <  2:706820/100‑1    ACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCGG                                                                                                        >  2:1819750/1‑99      AAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCGGTTT                                                                                                     >  2:1339519/1‑100                     TTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAA                                                                                      <  1:107575/100‑1                        CAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC                                                                                   <  2:187339/100‑1                                                       ATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGC                                                    <  2:1546506/100‑1                                                                                    TGAAACCGGGGAAACCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACT                       >  1:1175612/1‑100                                                                                    TGAAACCGGGGAAACCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACT                       >  1:1585582/1‑100                                                                                     GAAACCGGGGAAACCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTT                      >  2:697504/1‑100                                                                                     GAAACCGGGGAAACCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTT                      >  2:638333/1‑100                                                                                        ACCGGGGAAACCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGT                   >  1:1617570/1‑100                                                                                                 nCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGAT          >  2:1713442/2‑100                                                                                                  CCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATA         >  1:1996905/1‑100                                                                                                   CCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGatcggaaga        >  1:109753/1‑91                                                                                                   CCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAA        <  1:305837/100‑1                                                                                                     GGTTTCACAGTGATGATAAAAGCAAAATGGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCGTGCAATATGTGCATTACTTTGTAGGCCGGATAAGG      <  2:326404/100‑1                                                                                                       TTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCG    >  2:1339225/1‑100                                                                                                        TTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGT   <  2:2033991/100‑1                                                                                                         TCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTT  >  1:1128681/1‑100                                                                                                                                                                                                              CCTACAAAGTAATGCACATATTGCAAGGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTATCATCACTCTGAAACCGGGGAAACCCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3512571‑3512467 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggtttCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTT  >  NC_000913/3512487‑3512585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.