| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4063563 | NA (NA) | 6 (0.080) | 5/164 | NT | NA | noncoding (45/75 nt) | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4063593 | NA (NA) | noncoding (75/75 nt) | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4063468‑4063563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATCTCT < NC_000913/4063593‑4063488 CGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCtg < 1:1409083/100‑3CGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCag < 1:1411280/100‑3 GTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCGTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGG < 2:958717/100‑1 GTATTAGCCAACGTAAGAAAGAGATGCAGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGG > 1:1971190/1‑100 ATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGAT > 2:1936845/1‑100 ATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGACCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGAT > 2:1583720/1‑100 AAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCT < 2:678496/100‑1 AGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATC < 1:2050927/100‑1 GATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:1446441/100‑1 GCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 2:1345731/100‑1 TAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTAGCCGGATTAAGga < 1:1405756/100‑3 CCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATC > 2:448101/1‑100 GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGC < 2:1528516/100‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATC < 1:72301/100‑1 TGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATCTCT < 1:101454/100‑1 CGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4063468‑4063563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATCTCT < NC_000913/4063593‑4063488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |