New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2539608 =NA (NA)3 (0.040) 3/166 NT NA noncoding (2/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2539638 = NA (NA)noncoding (32/36 nt) REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 122 total aligned reads displayed.

ACTGCCGTTATCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA  >  NC_000913/2539509‑2539707
                                                                                                   |                                                                                                   
ctctcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagac                                                                                                     <  1:602130‑M1/1‑1 (MQ=255)
ctctcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagac                                                                                                     <  2:1729843‑M1/1‑1 (MQ=255)
  ctcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCt                                                                                                   >  1:1950836‑M1/98‑100 (MQ=255)
  ctcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCt                                                                                                   <  2:1640729‑M1/3‑1 (MQ=255)
  ctcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCt                                                                                                   >  2:1739482‑M1/98‑100 (MQ=255)
  ctcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCt                                                                                                   <  1:169397‑M1/3‑1 (MQ=255)
   tcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTg                                                                                                  >  2:1390846‑M1/97‑100 (MQ=255)
   tcgcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTg                                                                                                  >  2:178198‑M1/97‑100 (MQ=255)
     gcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTGAt                                                                                                <  2:676063‑M1/6‑1 (MQ=255)
     gcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTGAt                                                                                                >  1:782760‑M1/95‑100 (MQ=255)
     gcacaaagcgcctgataggttgagtgaatgttaaacgcccggaggcgcttcccgcaatccgggctttttaatggcaaggtttgtaacctgtagaCCTGAt                                                                                                <  1:674144‑M1/6‑1 (MQ=255)
     cGTTATCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGAt                                                                                                >  2:1338430/1‑100 (MQ=255)
      gTTATCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATg                                                                                               >  1:881399/1‑100 (MQ=255)
      gTTATCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATg                                                                                               <  1:578604/100‑1 (MQ=255)
      gTTATCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATg                                                                                               >  1:1298472/1‑100 (MQ=255)
         aTCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGa                                                                                            <  1:469403/100‑1 (MQ=255)
         aTCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGa                                                                                            <  1:2065150/100‑1 (MQ=255)
          tCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGAc                                                                                           >  1:946447/1‑100 (MQ=255)
           ccGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACg                                                                                          >  1:869012/1‑100 (MQ=255)
            nggCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGc                                                                                         >  1:345786/2‑100 (MQ=255)
            cGGCCCCATTCGCTGCAACTTCCCCAGAGGCGCATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGcgccgc                                                                                         >  2:1192433/1‑100 (MQ=255)
             gtccccAGTCGCTGCAACTTGACCAGGGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGAGCTCTATCCATACGTGGTGTTGCCTGATg                                                                                               <  2:1883771/91‑1 (MQ=255)
                cccATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTgc                                                                                     >  1:316711/1‑100 (MQ=255)
                 ccATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTgcg                                                                                    <  2:544994/100‑1 (MQ=255)
                 ccATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTgcg                                                                                    >  1:923687/1‑100 (MQ=255)
                 ccATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTgcg                                                                                    <  1:1701233/100‑1 (MQ=255)
                   aTTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGcgcg                                                                                  >  1:371342/1‑100 (MQ=255)
                     tCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTACCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTc                                                                                <  2:458428/100‑1 (MQ=255)
                     tCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCGAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTc                                                                                <  2:1453007/100‑1 (MQ=255)
                      cGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCt                                                                               <  2:1808846/100‑1 (MQ=255)
                       gCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCtt                                                                              <  1:1427060/100‑1 (MQ=255)
                       gCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCtt                                                                              <  1:42238/100‑1 (MQ=255)
                        cTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTa                                                                             <  2:1118711/100‑1 (MQ=255)
                        cTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTa                                                                             >  2:1005714/1‑100 (MQ=255)
                           cAACTTCACCAGAGGCGTATTGCCTATTGTTTATTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCa                                                                          <  1:1912926/100‑1 (MQ=255)
                           agtgaatgttaaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTGATGCGACGCTTGCGCGTCTTATCa                                                                          >  2:810364‑M1/73‑100 (MQ=255)
                            aaCTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAg                                                                         >  1:1281224/1‑100 (MQ=255)
                             aCTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCa                                                                          >  1:1730076/1‑98 (MQ=255)
                             aCTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAgg                                                                        >  1:459286/1‑100 (MQ=255)
                             aCTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAgg                                                                        >  1:1729855/1‑100 (MQ=255)
                             aCTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAgg                                                                        >  1:827040/1‑100 (MQ=255)
                              cTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGt                                                                       >  2:75402/1‑100 (MQ=255)
                               ttCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTc                                                                      <  1:302882/100‑1 (MQ=255)
                                  aCCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTAc                                                                   >  2:1971527/1‑100 (MQ=255)
                                  aCCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTAc                                                                   <  2:1985238/100‑1 (MQ=255)
                                   ccAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACa                                                                  >  1:530830/1‑100 (MQ=255)
                                   ccAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACa                                                                  >  1:1277415/1‑100 (MQ=255)
                                    cAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAg                                                                 >  1:238897/1‑100 (MQ=255)
                                    cAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAg                                                                 <  2:594428/100‑1 (MQ=255)
                                    cAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAg                                                                 >  1:193205/1‑100 (MQ=255)
                                     aaacgcccggaggcgcttcccgcgatccgggctttttaatggcaaggtttgtaacctgtagaCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAgg                                                                >  2:615837‑M1/63‑100 (MQ=255)
                                      gagGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGt                                                               >  2:140732/1‑100 (MQ=255)
                                       agGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGtt                                                              <  1:924563/100‑1 (MQ=255)
                                        ggCGTCTTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGtt                                                              <  2:722831/99‑1 (MQ=255)
                                        ggCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTa                                                             <  1:1206896/100‑1 (MQ=255)
                                                gCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCtt                                                     >  1:1895191/1‑100 (MQ=255)
                                                 ccTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTg                                                    <  2:2045286/100‑1 (MQ=255)
                                                   tATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGcc                                                  <  1:526846/100‑1 (MQ=255)
                                                   tATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGcc                                                  <  2:1346066/100‑1 (MQ=255)
                                                    aTTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTGGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCa                                                 <  1:2070839/100‑1 (MQ=255)
                                                       gtttgttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTa                                              >  1:676066/1‑100 (MQ=255)
                                                           gttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCGGGTCTACAGGTTACAAACCTTGCCATTaaaaa                                          >  2:82628/1‑100 (MQ=255)
                                                           gttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTaaaaa                                          >  1:1073190/1‑100 (MQ=255)
                                                            ttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAG                                         >  2:597478‑M1/1‑100 (MQ=255)
                                                            ttCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAG                                         >  2:1637190‑M1/1‑100 (MQ=255)
                                                             tCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGC                                        >  2:395689‑M1/1‑100 (MQ=255)
                                                                aaTGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCG                                     >  1:1206837‑M1/1‑100 (MQ=255)
                                                                aaTGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCG                                     >  2:154158‑M1/1‑100 (MQ=255)
                                                                   gTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAt                                  >  1:1394988/1‑100 (MQ=255)
                                                                      cTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACTGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgc                               >  1:1969498/1‑100 (MQ=255)
                                                                      cTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgc                               >  1:1829372/1‑100 (MQ=255)
                                                                      cTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcg                                >  1:1236971/1‑99 (MQ=255)
                                                                       tCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATcgcg                              <  2:929856/100‑1 (MQ=255)
                                                                        cACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCgg                             >  2:456466/1‑100 (MQ=255)
                                                                              ctctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAgcg                       <  1:812990/100‑1 (MQ=255)
                                                                                ctATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGcc                     >  2:1488034/1‑100 (MQ=255)
                                                                                  aTCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGGAGCGCCtc                   <  1:2002055‑M2/100‑3 (MQ=255)
                                                                                   tCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtcc                  >  2:1895175‑M2/1‑97 (MQ=255)
                                                                                   tCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtcc                  <  2:410234‑M2/100‑4 (MQ=255)
                                                                                    ccATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtccg                 <  2:1431034‑M2/100‑5 (MQ=255)
                                                                                      aTACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtccggg               >  2:1993750‑M2/1‑94 (MQ=255)
                                                                                       tACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAggcgcttcccgcgatccgggc              <  1:1767940‑M1/100‑22 (MQ=255)
                                                                                       tACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtccgggc              <  2:89171‑M2/100‑8 (MQ=255)
                                                                                       tACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtccgggc              >  2:309713‑M2/1‑93 (MQ=255)
                                                                                       tACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCtccgggc              >  1:405373‑M2/1‑93 (MQ=255)
                                                                                        aCGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCg             <  1:1542493/100‑1 (MQ=255)
                                                                                        aCGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCg             <  2:1538762/100‑1 (MQ=255)
                                                                                        aCGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCg             <  1:1971543/100‑1 (MQ=255)
                                                                                          gtggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGtt           >  1:140255/1‑100 (MQ=255)
                                                                                          gtggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGtt           <  2:1829359/100‑1 (MQ=255)
                                                                                           tggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGttt          <  2:1384664/100‑1 (MQ=255)
                                                                                            ggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTa         <  2:946444/100‑1 (MQ=255)
                                                                                            ggtgTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTa         <  1:1358288/100‑1 (MQ=255)
                                                                                              tgtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAAc       <  1:1338438/100‑1 (MQ=255)
                                                                                              tgtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAAc       <  1:1177302/100‑1 (MQ=255)
                                                                                               gtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGAggcgcttcccgcgatccgggctttttaat      <  2:1277409‑M1/100‑30 (MQ=255)
                                                                                               gtTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACa      >  1:703205/1‑100 (MQ=255)
                                                                                                  gCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTc   <  2:712725/100‑1 (MQ=255)
                                                                                                  gCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTc   >  2:933197/1‑100 (MQ=255)
                                                                                                   CCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCa  >  1:1712357‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ACTGCCGTTATCCGGCCCCATTCGCTGCAACTTCACCAGAGGCGTATTGCCTATTGTTTGTTCTAATGTACTCACGATCTCTATCCATACGTGGTGTTGCCTGATGCGACGCTTGCGCGTCTTATCAGGTCTACAGGTTACAAACCTTGCCATTAAAAAGCCCGGATCGCGGGAAGCGCCTCCGGGCGTTTAACATTCA  >  NC_000913/2539509‑2539707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.