| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3908387 = | NA (NA) | 6 (0.080) | 6/164 | NT | NA | noncoding (1/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3908412 = | NA (NA) | noncoding (26/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TCAGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCT > NC_000913/3908288‑3908485 | tCAGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTg < 1:1866589/100‑1 (MQ=255)tCAGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTg < 1:1737875/100‑1 (MQ=255)tCAGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTg < 1:1363757/100‑1 (MQ=255)cccagaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaag < 1:718730‑M1/1‑1 (MQ=255)cccagaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaag < 1:1772372‑M1/1‑1 (MQ=255) cagaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGcc > 1:1117117‑M1/98‑100 (MQ=255) aGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCCTTGCAATCTTTTCCTCATCGTGcc > 1:790201/1‑100 (MQ=255) aGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGcc > 1:976395/1‑100 (MQ=255) ggggcgcggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGcc > 2:596955‑M1/94‑96 (MQ=255) cATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGAt < 1:1748431/100‑1 (MQ=255) aTGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATg < 2:186090/100‑1 (MQ=255) tGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGc < 1:1377623/100‑1 (MQ=255) tGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGc < 2:1048820/100‑1 (MQ=255) tGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGc < 2:1903281/100‑1 (MQ=255) aaTTTGTCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACt < 2:1759592/100‑1 (MQ=255) tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATATTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc < 2:836742/100‑1 (MQ=255) tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc < 2:1586783/100‑1 (MQ=255) tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc < 2:851319/100‑1 (MQ=255) tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc > 2:467166/1‑100 (MQ=255) tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc > 1:1845193/1‑100 (MQ=255) tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc < 1:519844/100‑1 (MQ=255) cGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTaa > 2:218827/1‑100 (MQ=255) gtagtaGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAAt > 1:1258804/1‑100 (MQ=255) tagtagAAGTTCAAATTACGAACCTGCATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAAt > 2:129480/1‑99 (MQ=255) tagtagAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATc < 2:1527263/100‑1 (MQ=255) tagtagAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATc < 2:1745633/100‑1 (MQ=255) agtagAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCa > 1:41403/1‑100 (MQ=255) tagAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAgg > 2:1494629/1‑100 (MQ=255) agAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGc < 1:408063/100‑1 (MQ=255) gAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCt < 1:1349918/100‑1 (MQ=255) agcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCt > 1:369772‑M1/75‑100 (MQ=255) agcgcatttttgactctgtacacggttaacactttgctggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACGTCGCTAATCAGGc > 2:1656281‑M1/75‑99 (MQ=255) gcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCtt > 1:1110698‑M1/74‑100 (MQ=255) aGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTa > 2:780517/1‑100 (MQ=255) aGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTa > 1:1965508/1‑100 (MQ=255) gcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCTTAc > 2:1055955‑M1/72‑100 (MQ=255) gTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTAc < 2:563194/100‑1 (MQ=255) gTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTAc > 1:780999/1‑100 (MQ=255) cctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCTTAcc > 2:496533‑M1/71‑100 (MQ=255) tCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCg > 2:55955/1‑100 (MQ=255) aaTTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAg > 1:197045/1‑100 (MQ=255) ttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCTTACCGTAgg > 2:1959455‑M1/66‑100 (MQ=255) aTTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAgg < 1:54687/100‑1 (MQ=255) ttACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAgg < 1:857700/99‑1 (MQ=255) cGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCgg < 1:1784575/100‑1 (MQ=255) cGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCgg > 1:217826/1‑100 (MQ=255) aaCCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGAt < 1:129482/100‑1 (MQ=255) aCCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATc < 2:1977757/100‑1 (MQ=255) ccTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGACTGATGCACTTTGCTCATAAGGCTTACCGt > 2:1676991/1‑89 (MQ=255) tGAATTTTCCTCGGGGCAGTTTCAACCATCCTCATTGCCATCTTTTCCTCATCGTGCCTGATGCACGTCGCTAATCAGGCTTATCGTAGGCCGGATCAgg < 2:1209945/100‑1 (MQ=255) gAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGc > 1:374841/1‑100 (MQ=255) tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTc < 2:1102201/100‑1 (MQ=255) tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTc < 1:395893/100‑1 (MQ=255) tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTGCCTCATCGTGCCTGATGCACGTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTc < 2:1431128/100‑1 (MQ=255) cGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgccg < 1:1578059/100‑1 (MQ=255) cGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgccg < 1:780520/100‑1 (MQ=255) cGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgccg > 2:1713682/1‑100 (MQ=255) cGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgccg > 1:487025/1‑100 (MQ=255) tggCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCa < 2:1472935/99‑1 (MQ=255) ggCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCaa > 1:1472945/1‑99 (MQ=255) tACTCCTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGtt < 2:410426/99‑1 (MQ=255) aCTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTaa < 1:1132876/100‑1 (MQ=255) tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAAcc < 1:531349/100‑1 (MQ=255) cATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCg < 2:1902812/100‑1 (MQ=255) cATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCg < 1:1494639/100‑1 (MQ=255) cATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCg < 1:908617/100‑1 (MQ=255) aTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgt < 1:593889/100‑1 (MQ=255) aTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgt > 2:718727/1‑100 (MQ=255) ttGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgtg < 1:1846801/100‑1 (MQ=255) tGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgtgt > 2:1772359/1‑100 (MQ=255) gCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTa > 2:987616/1‑100 (MQ=255) gCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTa < 1:784503/100‑1 (MQ=255) gCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCATGTa > 1:1269867/1‑100 (MQ=255) aaTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACa < 1:671180/100‑1 (MQ=255) aaTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACa < 1:1317659/100‑1 (MQ=255) cTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACagag < 1:247046/100‑1 (MQ=255) tCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaa > 2:391582/1‑100 (MQ=255) cTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaaa > 1:1880636/1‑100 (MQ=255) tCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaaaa > 1:1598962/1‑100 (MQ=255) tCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgc > 2:2002665/1‑100 (MQ=255) tCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgc < 2:1956228/100‑1 (MQ=255) tCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgc < 1:722495/100‑1 (MQ=255) cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGCCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgcg > 2:1771356/1‑100 (MQ=255) tGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCt > 1:787892/1‑100 (MQ=255) | TCAGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCT > NC_000913/3908288‑3908485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |