| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 226704 = | NA (NA) | 5 (0.070) | 4/170 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
TCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCC > NC_000913/226605‑226803 | tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC < 2:78515‑M1/100‑1 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC < 2:1392577‑M1/100‑1 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC < 2:1493300‑M1/100‑1 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC < 2:75258‑M1/100‑1 (MQ=255)tCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC > 2:745933‑M1/1‑100 (MQ=255) cagctccggGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA < 2:701296‑M1/97‑1 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCCTCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGAAACA > 2:716338‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:1010731‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 1:146704‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:1696981‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:300115‑M1/1‑100 (MQ=255) cATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA > 2:1912858‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 2:1158360‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 2:1779229‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 1:515719‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 1:1109481‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 2:228985‑M1/1‑100 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC < 2:522491‑M1/100‑1 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC < 1:1578582‑M1/100‑1 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACA < 2:729233‑M1/99‑1 (MQ=255) aTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCAACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC < 2:1983232‑M1/100‑1 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 1:573438‑M1/1‑100 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 1:624653‑M1/1‑100 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG < 1:354793‑M1/100‑1 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACG > 2:2072520‑M1/1‑100 (MQ=255) tctcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAC > 2:1530836‑M1/1‑99 (MQ=255) tcCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGAGACACG > 2:1118555‑M1/1‑98 (MQ=255) ccGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACagcg > 2:1014384‑M1/1‑96 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:897740‑M1/100‑23 (MQ=255) tCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtg < 1:722685‑M1/100‑23 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgt < 2:782942‑M1/100‑24 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgt < 2:396062‑M1/100‑24 (MQ=255) cGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACAC‑‑cggacgttagcacccgccgtgtgtc < 2:11042‑M1/100‑26 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:1191328‑M1/100‑25 (MQ=255) ggCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtg < 1:2033220‑M1/100‑25 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 1:1262892‑M1/100‑26 (MQ=255) gCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgt < 2:1262711‑M1/100‑26 (MQ=255) aGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctc < 1:336512‑M1/100‑29 (MQ=255) gggagTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcc < 1:732224‑M1/100‑30 (MQ=255) tCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttagcacccgccgtgtgtctcccgtgataa < 1:1983980‑M1/100‑38 (MQ=255) aCCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGacggacgttaacacccaccgtgtgtctcccgtgataacattctccg > 1:1903839‑M1/1‑54 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:546583‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:1839951‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga < 1:140769‑M1/100‑97 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:704587‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 2:1841844‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:118326‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgggttggtaagtcgggatgacccccttgccga > 1:118270‑M1/1‑4 (MQ=255) cacGacggacgttagcacccgccgtgtgtctcccgtgataacattctccggtattcgcagtttgcatcgcgatggtaagtcgggatgacccccttgccga > 2:1839099‑M1/1‑4 (MQ=255) | TCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCC > NC_000913/226605‑226803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |