New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4583004 =88 (1.150)3 (0.040) 3/168 NT 3.8% coding (45/1590 nt) hsdM DNA methyltransferase M
?NC_000913 4583031 = 69 (0.950)coding (18/1590 nt) hsdM DNA methyltransferase M
Rejected: Frequency below cutoff threshold.

Only 100 of 108 total aligned reads displayed.

TTCCGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAA  >  NC_000913/4582905‑4583103
                                                                                                   |                                                                                                   
ttCCGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTg                                                                                                     >  2:1446194/1‑100 (MQ=255)
ttCCGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTg                                                                                                     <  1:1425990/100‑1 (MQ=255)
 ttttgtgtatattaccctcggcaatttcttcttctgcggctcgatgaatttgggccgctgcttaatttccggaactcacaatgaacaataacgatctgg                                                                                                     <  1:191989‑M1/1‑1 (MQ=255)
 tCCGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGt                                                                                                    >  1:1791583/1‑100 (MQ=255)
 tCCGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCAAGGCGAGTTCATTGACGTAGATTTGATAGGAAACGCCGCCATCGCGCAGGTTGt                                                                                                    >  1:1198840/1‑100 (MQ=255)
   cGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCg                                                                                                  >  2:1178579/1‑100 (MQ=255)
   cGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCg                                                                                                  <  2:1499077/100‑1 (MQ=255)
    tgtgtatattaccctcggcaatttcttcttctgcggctcgatgaatttgggccgctgcttaatttacggaactcacaatgaacaataacgatctgGTCGc                                                                                                 >  1:525934‑M1/96‑100 (MQ=255)
    tgtgtatattaccctcggcaatttcttcttctgcggctcgatgaatttgggccgctgcttaatttacggaactcacaatgaacaataacgatctgGTCGc                                                                                                 <  2:2026819‑M1/5‑1 (MQ=255)
    gCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGc                                                                                                 <  2:1906373/100‑1 (MQ=255)
      ttCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcac                                                                                               <  2:21702/100‑1 (MQ=255)
      ttCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcac                                                                                               <  2:1791570/100‑1 (MQ=255)
       tCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcaca                                                                                              >  2:1988581/1‑100 (MQ=255)
       tCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcac                                                                                               <  2:21622/99‑1 (MQ=255)
        ccTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcaca                                                                                              >  1:1459027/1‑99 (MQ=255)
          tGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagct                                                                                           >  1:430201/1‑100 (MQ=255)
             ccGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagcttcc                                                                                        >  1:767163/1‑100 (MQ=255)
             ccGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagcttcc                                                                                        >  2:906038/1‑100 (MQ=255)
                gTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagcttccaca                                                                                     <  1:83099/100‑1 (MQ=255)
                 tctcTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagcttccacag                                                                                    <  2:546329/100‑1 (MQ=255)
                   tctTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagcttccacagct                                                                                  >  2:903763/1‑100 (MQ=255)
                    ctTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGcacagcttccacagctt                                                                                 >  2:1637301/1‑100 (MQ=255)
                     tttACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAATCGCCGCCATCGCGCAGGTTGTCGcacagcttccacagcttc                                                                                <  1:464376/100‑1 (MQ=255)
                       tACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTcgc                                                                              <  2:1918485/100‑1 (MQ=255)
                       tACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTcgc                                                                              >  1:465290/1‑100 (MQ=255)
                       tACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTcgc                                                                              <  1:925911/100‑1 (MQ=255)
                        acacATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAACCGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTcgc                                                                              <  1:1157140/99‑1 (MQ=255)
                        acacATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTcgcg                                                                             <  1:310708/100‑1 (MQ=255)
                         cacaTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGa                                                                            >  2:885857/1‑100 (MQ=255)
                         cacaTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGa                                                                            >  1:992136/1‑100 (MQ=255)
                         cacaTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGa                                                                            <  2:2040271/100‑1 (MQ=255)
                           caTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGAcc                                                                          >  1:2026835/1‑100 (MQ=255)
                           caTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGAcc                                                                          >  2:1990934/1‑100 (MQ=255)
                           caTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGAcc                                                                          >  2:1990740/1‑100 (MQ=255)
                           caTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGAcc                                                                          >  2:191986/1‑100 (MQ=255)
                            cttcttctgcggctcgatgaatttgggccgctgcttaatttacggaactcacaatgaacaataacgatctgGTCGCACAGCTTCCACAGCTTCGCGACCa                                                                         >  2:338902‑M1/72‑100 (MQ=255)
                            aTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCa                                                                         >  1:805182/1‑100 (MQ=255)
                            aTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCa                                                                         >  1:797390/1‑100 (MQ=255)
                            aTTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCACGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCa                                                                         >  1:710090/1‑100 (MQ=255)
                             tttgcgaaaaCAGCAGCTGGGCTAGGTCATTGACGTAGTTTTGATAGGACACGCCGCCATCTCGCAGGTTGTCGCACAGCTTCCACAGCTTcgcg                                                                             <  2:1637722/89‑1 (MQ=255)
                              tttCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGa                                                                       <  1:1147140/100‑1 (MQ=255)
                               ttCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGa                                                                       >  1:775281/1‑99 (MQ=255)
                               ttCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGAt                                                                      >  1:774903/1‑100 (MQ=255)
                                  cttccgatctgcgaggcgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGt                                                                   <  2:1985822/90‑1 (MQ=255)
                                  ctgcggctcgatgaatttgggccgctgcttaatttacggaactcacaatgaacaataacgatctgGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGt                                                                   >  1:630580‑M1/66‑100 (MQ=255)
                                  aaaaaCATCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGt                                                                   >  2:1886933/1‑100 (MQ=255)
                                  aaaaaCAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGt                                                                   >  2:1771436/1‑100 (MQ=255)
                                  aaaaaCAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGt                                                                   >  2:2014551/1‑100 (MQ=255)
                                  aaaaaCAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGt                                                                   <  1:1292711/100‑1 (MQ=255)
                                    aaaCAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTa                                                                 <  2:513495/100‑1 (MQ=255)
                                      aCAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTAtt                                                               >  2:1237949/1‑100 (MQ=255)
                                       cagcagCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTg                                                              >  1:466291/1‑100 (MQ=255)
                                        agcagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGt                                                             <  1:1204100/100‑1 (MQ=255)
                                         gcagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCGTCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGtt                                                            <  2:901457/100‑1 (MQ=255)
                                         gcagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGtt                                                            >  2:1226231/1‑100 (MQ=255)
                                         gcagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGtt                                                            >  1:1762638/1‑100 (MQ=255)
                                         gcagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGtt                                                            >  2:1013280/1‑100 (MQ=255)
                                         gcagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTACACACCTTCGCGACCAGATCGTTATTGtt                                                            >  2:2032042/1‑100 (MQ=255)
                                          cagcGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACTCCGCCAACGCGCGGGTTGTCGCACGGCTTCCACGGCTTCGCGACCAGATCGTTATTGTTc                                                           <  2:1678556/100‑1 (MQ=255)
                                            gcgaggcgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGCTCGtagatcggaag                                                         >  1:1985838/1‑90 (MQ=255)
                                            gcgaggcgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCAt                                                         <  1:1446204/100‑1 (MQ=255)
                                              gaggcgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATtg                                                       <  2:6844/100‑1 (MQ=255)
                                                ggcgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATtgtg                                                     <  2:1069015/100‑1 (MQ=255)
                                                ggcgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATtgtg                                                     <  1:1201277/100‑1 (MQ=255)
                                                  cgagTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAg                                                   <  1:863834/100‑1 (MQ=255)
                                                     gTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTc                                                >  1:124544/1‑100 (MQ=255)
                                                       tCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCg                                              >  2:957611/1‑100 (MQ=255)
                                                        cATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGt                                             >  2:794367/1‑100 (MQ=255)
                                                           tGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTaaa                                          <  1:1169081/100‑1 (MQ=255)
                                                           tGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTaaa                                          <  2:1814357/100‑1 (MQ=255)
                                                            gACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAAt                                         >  1:1870996/1‑100 (MQ=255)
                                                              cGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTa                                       <  1:163445/100‑1 (MQ=255)
                                                              cGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTa                                       <  1:2037776/100‑1 (MQ=255)
                                                               gTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTaa                                      >  1:1833140/1‑100 (MQ=255)
                                                                 aGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAagc                                    >  2:1004691/1‑100 (MQ=255)
                                                                 aGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAagc                                    <  2:869769/100‑1 (MQ=255)
                                                                  gTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAagca                                   >  2:135664/1‑100 (MQ=255)
                                                                  gTTTTGACAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAagca                                   >  1:786174/1‑100 (MQ=255)
                                                                     ttGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCg                                <  1:866468/100‑1 (MQ=255)
                                                                        aTAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGcc                             >  1:1727171/1‑100 (MQ=255)
                                                                         tAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAagcagc                                 >  2:393363/1‑95 (MQ=255)
                                                                         tAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGccc                            >  2:398567/1‑100 (MQ=255)
                                                                         tAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGccc                            >  1:1197091/1‑100 (MQ=255)
                                                                          aGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCa                           >  1:284061/1‑100 (MQ=255)
                                                                           ggAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCaa                          >  2:958595/1‑100 (MQ=255)
                                                                             aaaCGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAAt                        >  2:628682/1‑100 (MQ=255)
                                                                               aCGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTc                      >  1:46753/1‑100 (MQ=255)
                                                                                cgccgcCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCa                     >  2:1288225/1‑100 (MQ=255)
                                                                                cgatctggtCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGCCCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCATCGGCCCAAATTCa                     <  1:371683/92‑1 (MQ=255)
                                                                                  ccgccATCGCGCAGGTTGTCGCTCAGCTTCCGCAGCTCCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATc                   <  2:1399487/100‑1 (MQ=255)
                                                                                     ccATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAg                >  1:1239843/1‑100 (MQ=255)
                                                                                       aTCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGcc              <  1:1541148/100‑1 (MQ=255)
                                                                                         cgcgCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGc            >  1:1172433/1‑100 (MQ=255)
                                                                                          gcgcAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCa           <  1:342201/100‑1 (MQ=255)
                                                                                            gcAGGTTGTCGCACAGCTTCCACAGCTTCGCGACTAGATCGTTATTGTTCATTGTGAGTTTCGTAAATTAAGCAGCGGCTCAAATTCATCGAGCCGCaga         <  2:1230199/100‑1 (MQ=255)
                                                                                            gcAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCaga         <  1:854331/100‑1 (MQ=255)
                                                                                            gcAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCaga         <  1:1013283/100‑1 (MQ=255)
                                                                                                 ttGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCagaagaag    >  1:1563671/1‑100 (MQ=255)
                                                                                                   GTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAACTTCATCGAGCCGCAgaagacgaa  <  2:1588020‑M1/100‑1 (MQ=255)
                                                                                                   GTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAgaagaagaa  <  1:375229‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TTCCGCTTCCTGACCGGTCTCTTTACACATTTTCAAAAACAGCAGCGAGGCGAGTTCATTGACGTAGTTTTGATAGGAAACGCCGCCATCGCGCAGGTTGTCGCACAGCTTCCACAGCTTCGCGACCAGATCGTTATTGTTCATTGTGAGTTCCGTAAATTAAGCAGCGGCCCAAATTCATCGAGCCGCAGAAGAAGAA  >  NC_000913/4582905‑4583103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.