New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3622540 =	NA (NA)	4 (0.060)	3/168	NT	100%	coding (3349/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3622556 =	0 (0.000)					coding (3365/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT  >  NC_000913/3622457‑3622655                                                                                                    |                                                                                                    gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     <  2:153750‑M2/1‑1 (MQ=255) gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     >  1:413796‑M2/100‑100 (MQ=255)  tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    <  1:904508‑M2/2‑1 (MQ=255)  tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    <  1:77365‑M2/2‑1 (MQ=255)   cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   >  1:66874‑M2/98‑100 (MQ=255)    gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  <  1:1907664‑M2/4‑1 (MQ=255)    gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccaaggtcaggccgcacgatgccagccagcggcgg                                                                                                  <  2:219913‑M2/4‑1 (MQ=255)     cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:1333454‑M2/5‑1 (MQ=255)     cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:1942525‑M2/5‑1 (MQ=255)     cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:1124987‑M2/5‑1 (MQ=255)      agtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:1853962‑M2/5‑1 (MQ=255)                                                                    tccacggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAc                                  >  2:405786‑M2/33‑100 (MQ=255)                                                                            cgtcaggccgcacgatgccagccaGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa                          >  2:527806‑M2/25‑100 (MQ=255)                                                                              ggccgcacgatgccagccagcgGCGGCCTGACAGTGGAGCAGATGCAAAACCAGAGGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  1:1970301‑M2/23‑100 (MQ=255)                                                                               gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  2:1477453‑M2/22‑100 (MQ=255)                                                                                                    GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  <  2:1319005‑M2/100‑1 (MQ=255)                                                                                                    GCGGCCTGACCGTCGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  <  2:1242532‑M2/100‑1 (MQ=255)                                                                                                    |                                                                                                    TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT  >  NC_000913/3622457‑3622655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.