New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	271192 =	NA (NA)	3 (0.040)	3/166	NT	21.2%	noncoding (652/1221 nt)	IS30	repeat region
	?	NC_000913	271215 =	12 (0.160)					noncoding (675/1221 nt)	IS30	repeat region

CGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGCGATT  >  NC_000913/271117‑271314                                                                                                   |                                                                                                    gcgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatgg                                                                                                    <  1:1105318‑M2/2‑1 (MQ=255) gcgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatgg                                                                                                    <  1:847966‑M2/2‑1 (MQ=255) gcgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatgg                                                                                                    >  2:1077961‑M2/99‑100 (MQ=255) gcgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatgg                                                                                                    >  1:1942258‑M2/99‑100 (MQ=255) gcgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatgg                                                                                                    >  2:174904‑M2/99‑100 (MQ=255) gcgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatgg                                                                                                    >  1:1137008‑M2/99‑100 (MQ=255)  cgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGc                                                                                                   >  1:194476‑M2/98‑100 (MQ=255)  cgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGc                                                                                                   <  1:199743‑M2/3‑1 (MQ=255)  cgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGc                                                                                                   <  2:1421749‑M2/3‑1 (MQ=255)  cgtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGc                                                                                                   <  1:1119712‑M2/3‑1 (MQ=255)   gtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGCg                                                                                                  >  2:2067323‑M2/97‑100 (MQ=255)   gtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGCg                                                                                                  <  2:1826420‑M2/4‑1 (MQ=255)   gtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGCg                                                                                                  <  1:1525833‑M2/4‑1 (MQ=255)   gtctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGCg                                                                                                  <  1:435160‑M2/4‑1 (MQ=255)    tctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGCGa                                                                                                 >  2:215381‑M2/96‑100 (MQ=255)    tctgttatcgatatttcgggaacgttcgtgaattggtgttccgttcactatgttaatcgtacctctttcgcctttgcgggtatgacgcctgccatGGCGa                                                                                                 <  1:209368‑M2/5‑1 (MQ=255)                                                                 cctctttcgcctttgcgggtatgacgcctgccatGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGAt                                    >  1:608026‑M2/35‑100 (MQ=255)                                                                   tctttcgcctttgcgggtatgacgcctgccatGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATaa                                  >  2:1627809‑M2/33‑100 (MQ=255)                                                                         gcctttgcgggtatgacgcctgccatGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACg                            >  1:1614659‑M2/27‑100 (MQ=255)                                                                                 aGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTgg                    <  1:965753/100‑1 (MQ=31)                                                                                  ggCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTggg                   >  1:415928/1‑100 (MQ=32)                                                                                   gCGTCATACCCGCAAAGGCGAAAGAGGTACGAGTAACATAGTGAACGGAACACCAATTCACGAGCGTGCCCGAAATATCGATAACAGACGCTCTCTggg                   <  2:739246/99‑1 (MQ=255)                                                                                    cGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGc                 <  2:1542790/100‑1 (MQ=32)                                                                                     gTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCa                <  2:515422/100‑1 (MQ=33)                                                                                      tCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGACATATCGATAACAGACGCCCTCTGGGGCa                >  2:1977690/1‑99 (MQ=12)                                                                                           cccGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGa          >  2:667396/1‑100 (MQ=33)                                                                                           cccGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGa          >  1:1319286/1‑100 (MQ=33)                                                                                            ccGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAg         >  2:1066604/1‑100 (MQ=33)                                                                                            ccGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAg         <  1:1413918/100‑1 (MQ=33)                                                                                             cGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAgg        <  2:850627/100‑1 (MQ=33)                                                                                             cGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAgg        >  2:1197712/1‑100 (MQ=32)                                                                                              gCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAggg       <  2:1005112/100‑1 (MQ=33)                                                                                               cAAAGGCGAAAGAGGTTCGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGc      <  2:1211368/100‑1 (MQ=17)                                                                                               cAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGc      <  1:1604512/100‑1 (MQ=33)                                                                                               cAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGc      >  1:1674540/1‑100 (MQ=33)                                                                                               cAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGc      <  1:1256524/100‑1 (MQ=33)                                                                                               cAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGc      >  2:534790/1‑100 (MQ=32)                                                                                               cAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGc      <  1:1008433/100‑1 (MQ=33)                                                                                                 aaGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGCGa    >  2:1468128/1‑100 (MQ=33)                                                                                                   GGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGCGAtt  >  1:406175‑M2/1‑100 (MQ=255)                                                                                                   |                                                                                                    CGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTGGGGCATTGGGAGGGCGATT  >  NC_000913/271117‑271314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.