New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2316985NA (NA)7 (0.100)
+AAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAA		 6/118 9.5 9.6% noncoding (152/197 nt) RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site
?NC_000913 = 4549883 111 (0.980)intergenic (+173/+70) fimH/gntP minor component of type 1 fimbriae/fructuronate transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

TAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2316944‑2316985
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCTCGCCCCTCCGGGGAGAGGGTTAGGGT  <  NC_000913/4549883‑4549854
                                          ||||||||||||||||||||||||||||||||||||||||                              
ctttGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTGCCCTCACCCTAACCCTCGCCCCTCCGGGGA              <  1:721887/96‑1
    GTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCGCCCCTCCGGGGAGAGG          <  1:968215/100‑1
     TAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCGCCCCTCCGGGGAGAGGG         <  1:2521799/100‑1
         CCAGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCGCCCCTCCGGGGAGAGGGTTAG     <  1:873564/100‑1
           AGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCGCCCCTCCGGGGAGAGGGTTAGGG   <  1:1304533/100‑1
           AGATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCGCCCCTCCGGGGAGAGGGTTAGGG   <  1:80681/100‑1
            GATAAGACGCGTCAGCGTCGCATCTGGCATAAACAAAGCGCACTTTGCTGGTCTGTTCCCCTCACCCTAACCCTCGCCCCTCCGGGGAGAGGGTTAGGGT  <  1:1300020/100‑1
                                          ||||||||||||||||||||||||||||||||||||||||                              
TAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2316944‑2316985
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCTCGCCCCTCCGGGGAGAGGGTTAGGGT  <  NC_000913/4549883‑4549854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.