New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	39151 =	NA (NA)	4 (0.040)	3/164	NT	NA	noncoding (1/82 nt)	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	39181 =	NA (NA)					noncoding (31/82 nt)	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences

GCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/39256‑39151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  >  NC_000913/39181‑39278                                                                                                                                                                                                              GCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCA                                                                                                          <  2:350420/100‑1   AATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTCGGCCGGATAAAGCGTTTACGCCGCATC                                                                                                        >  2:671406/1‑100   AATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATC                                                                                                        <  2:192160/100‑1   AATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATC                                                                                                        >  1:2654890/1‑100    ATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCC                                                                                                       <  1:1282589/100‑1    ATACCGCTAAGTCCGCGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCC                                                                                                       <  1:2702466/100‑1      ACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGG                                                                                                     >  1:183087/1‑100       CCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC                                                                                                    <  1:1495182/100‑1                                                                       ATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACT                                    >  1:2461225/1‑100                                                                         GTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTA                                  >  1:2489713/1‑100                                                                             GCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGG                              >  1:1145024/1‑100                                                                             GCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGG                              >  2:2133364/1‑100                                                                                                     TCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCC      >  2:2515486/1‑100                                                                                                      CCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCA     >  1:861975/1‑100                                                                                                      CCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCA     >  2:1115083/1‑100                                                                                                         GCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  <  1:2417346/100‑1                                                                                                         GCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  <  2:816005/100‑1                                                                                                                                                                                                              GCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/39256‑39151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  >  NC_000913/39181‑39278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.