New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 900799	NA (NA)	8 (0.090)	6/164	NT	NA	noncoding (51/87 nt)	REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 900831	NA (NA)					noncoding (83/87 nt)	REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences

GACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/900701‑900799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATG  <  NC_000913/900831‑900726                                                                                                                                                                                                               GACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATG                                                                                                           >  1:223534/1‑100   CAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTC                                                                                                         <  1:1637728/100‑1     ACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTG                                                                                                       <  2:2648247/100‑1     ACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTG                                                                                                       >  2:125883/1‑100      CTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGA                                                                                                      <  2:2022934/100‑1                              ATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAG                                                                              <  1:104675/100‑1                                    ATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCA                                                                        <  1:1073048/100‑1                                    ATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCA                                                                        <  1:1681807/100‑1                                    ATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCA                                                                        <  1:2155962/100‑1                                      tgATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAG                                                                       <  1:582382/97‑1                                      TTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGC                                                                      <  1:1550206/100‑1                                       TATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCA                                                                     <  2:2460206/100‑1                                                     GCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCG                                                       <  1:1060753/100‑1                                                                                                    GTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTT        <  1:2738736/100‑1                                                                                                     TCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTA       >  1:179755/1‑100                                                                                                      CTGATAAGACGCGCCTGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTAT      <  1:2708701/100‑1                                                                                                      CTGATAAGACGCGCCAGCTTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATACGGCCTACATAGTGCATAAATTCTTAT      >  2:1349177/1‑100                                                                                                       TGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATA     >  1:684170/1‑100                                                                                                       TGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATA     >  1:1787889/1‑100                                                                                                         ATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAAT   >  1:287880/1‑100                                                                                                          TAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATG  >  2:1223108/1‑100                                                                                                                                                                                                               GACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATgtctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/900701‑900799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATG  <  NC_000913/900831‑900726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.