New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2617967	NA (NA)	4 (0.040)	4/164	NT	NA	intergenic (+30/+108)	yfgD/hda	putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
	?	NC_000913	= 2618000	NA (NA)					noncoding (33/37 nt)	REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences

TTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2617870‑2617967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACATCTTAACCCACGATTTCCAGTACCTGCTCCGGTGGACGACCAA  <  NC_000913/2618000‑2617897                                                                                                                                                                                                            TTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGC                                                                                                        <  1:1157993/100‑1  TGTGGTCACGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCC                                                                                                       <  1:112577/100‑1   GTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCG                                                                                                      <  2:223181/100‑1   GTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCG                                                                                                      <  2:2501727/100‑1   GTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGC                                                                                                        >  2:1428667/1‑98    TGGTCGCGAATGGCAAAGCTCGGATTGGTCGTGCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGG                                                                                                     <  2:2541263/100‑1     GGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGA                                                                                                    <  2:2284147/100‑1      GTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGAT                                                                                                   >  1:2224307/1‑100                                TCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATAAGACGTGGCAAGCGTCGCATCCGGC                                                                         <  2:2034897/100‑1                                     CACCGGAGCAGGTACCGGAAATGGTGGGTCAAGATGTGCACCATCGCTAGTTGAAGCACATTGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGT                                                                    <  1:2469894/100‑1                                      ACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTG                                                                   <  1:381914/100‑1                                       CCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGC                                                                  <  1:31902/100‑1                                                                                                    CCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACATCTTAACCCACGATTTCCAGTACCTGCTCCGGTGGACGAC     <  1:2137309/100‑1                                                                                                     CGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACATCTTAACCCACGATTTCCAGTACCTGCTCCGGTTGACGACC    <  1:1000394/100‑1                                                                                                      GGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACATCTTAACCCACGATTTCCAGTACCTGCTCCGGTGGACGACCA   >  2:1599156/1‑100                                                                                                       GATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACATCTTAACCCACGATTTCCAGTACCTGCTCCGGTGGACGACCAA  >  1:556881/1‑100                                                                                                                                                                                                            TTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2617870‑2617967 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACATCTTAACCCACGATTTCCAGTACCTGCTCCGGTGGACGACCAA  <  NC_000913/2618000‑2617897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.