New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3546222 =NA (NA)12 (0.130) 7/166 NT NA noncoding (1/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3546254 = NA (NA)noncoding (33/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 133 total aligned reads displayed.

TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG  >  NC_000913/3546123‑3546321
                                                                                                   |                                                                                                   
aatttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagg                                                                                                     >  2:1916030‑M1/100‑100 (MQ=255)
aatttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagg                                                                                                     <  2:2649969‑M1/1‑1 (MQ=255)
  tttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGcc                                                                                                   >  1:1041083‑M1/98‑100 (MQ=255)
  tttaaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGcc                                                                                                   <  1:949385‑M1/3‑1 (MQ=255)
  ctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGcc                                                                                                   <  2:2656572/100‑1 (MQ=255)
  ctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGcc                                                                                                   >  1:1847096/1‑100 (MQ=255)
     aaattatgagaggttggtcatattatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGa                                                                                                <  2:2631204‑M1/6‑1 (MQ=255)
     aaCGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGa                                                                                                >  2:719685/1‑100 (MQ=255)
      aCGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGAt                                                                                               >  1:309116/1‑100 (MQ=255)
        gAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGc                                                                                             >  1:10772/1‑100 (MQ=255)
            tCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGCTGCGAc                                                                                          >  2:1219149/1‑99 (MQ=255)
            tCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACg                                                                                         <  1:1685122/100‑1 (MQ=255)
             cccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGc                                                                                        >  1:1014425/1‑100 (MQ=255)
              ccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCt                                                                                       <  1:1195419/100‑1 (MQ=255)
              ccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCt                                                                                       <  2:561595/100‑1 (MQ=255)
                  aGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGACCGATGCGACGCTAAAg                                                                                   >  2:64435/1‑100 (MQ=255)
                    cTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCg                                                                                 <  2:1054864/100‑1 (MQ=255)
                     tGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCg                                                                                 >  1:1048790/1‑99 (MQ=255)
                     tGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGt                                                                                >  2:1713562/1‑100 (MQ=255)
                      gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                               >  1:1130135/1‑100 (MQ=255)
                      gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTCTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                               >  2:2153030/1‑100 (MQ=255)
                           ttatcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGAAATGACGCTAAAGCGTCATTTc                                                                          >  1:1293908‑M1/73‑100 (MQ=255)
                            tgtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCg                                                                         >  1:1645018/1‑100 (MQ=255)
                             gtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCgg                                                                        <  2:2534192/100‑1 (MQ=255)
                             atcgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCgg                                                                        >  2:1205752‑M1/71‑100 (MQ=255)
                              tgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCggg                                                                       <  1:2601792/100‑1 (MQ=255)
                               gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  1:2315324/1‑100 (MQ=255)
                               gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  1:243980/1‑100 (MQ=255)
                               gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  1:1401804/1‑100 (MQ=255)
                               gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTAGCCCCTCGTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCggg                                                                       <  2:555017/99‑1 (MQ=255)
                               cgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  1:1758437‑M1/69‑100 (MQ=255)
                               cgcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  1:2159293‑M1/69‑100 (MQ=255)
                                gcggggaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                     >  2:1262880‑M1/68‑100 (MQ=255)
                                 cggtgaaacgaaccgaggatttgacaaagcaatgctgcgccaacgtctggcacaggttctacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGc                                                                      >  2:1689863‑M1/67‑98 (MQ=255)
                                    aTCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTCAGTTATCACCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACg                                                                 >  1:156945/1‑100 (MQ=255)
                                       tcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTg                                                              <  1:1412892/100‑1 (MQ=255)
                                       tcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTg                                                              >  2:2473760/1‑100 (MQ=255)
                                        cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             >  1:2224323/1‑100 (MQ=255)
                                        cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             <  1:621133/100‑1 (MQ=255)
                                        cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             >  1:815770/1‑100 (MQ=255)
                                        cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTACCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             >  1:2337565/1‑100 (MQ=255)
                                         aCCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGaa                                                            >  1:1555774/1‑100 (MQ=255)
                                          ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                             >  2:2709698/1‑98 (MQ=255)
                                          ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                           <  1:871641/100‑1 (MQ=255)
                                               cacGAGCGCGGCGAACACTCCTACTACTAAGATATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                      <  1:99417/100‑1 (MQ=255)
                                               cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                      >  1:1910911/1‑100 (MQ=255)
                                               cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                      <  2:1250902/100‑1 (MQ=255)
                                                acCAGCGCGGCCAACACTCCTACTACTAAGTTAGCCGCTGTTGTGTAGATTGTGCGTGGCGACGCTAAAGCGTCATTGCGGGCCTACGTTGAACAtgtg                                                      <  2:367637/99‑1 (MQ=255)
                                                 ncAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAACGCGTCATTTCGGGCCTACGTTGAACAggtgac                                                    >  2:1433505/2‑98 (MQ=255)
                                                 ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                    <  2:1580699/100‑1 (MQ=255)
                                                 ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                    >  2:2295112/1‑100 (MQ=255)
                                                 ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                    >  1:34103/1‑100 (MQ=255)
                                                 ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                    >  1:276291/1‑100 (MQ=255)
                                                      gcggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATCTGCCAGACg                                               >  1:920759/1‑100 (MQ=255)
                                                       cggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGt                                              >  1:1406125/1‑100 (MQ=255)
                                                        ggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGtt                                             <  2:1591237/100‑1 (MQ=255)
                                                          cgAACACTGCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                    >  2:2309940/1‑91 (MQ=255)
                                                           gcacacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgc                                          >  2:1116941/3‑100 (MQ=255)
                                                            agcaatgctgcgccaacgtctggcacatgttcaacgtagGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcg                                         >  1:1561865‑M1/40‑100 (MQ=255)
                                                             acacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcgc                                        <  1:824557/100‑1 (MQ=255)
                                                               acTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcag                                      >  1:688104/1‑100 (MQ=255)
                                                               acTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcag                                      >  1:1480601/1‑100 (MQ=255)
                                                                cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                     >  2:1890406/1‑100 (MQ=255)
                                                                cTCCTACTACTAAGTCATCCCCTCTTTTTTAGATTGCCCGATGCAACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCccagc                                     <  2:2514999/100‑1 (MQ=255)
                                                                   ctactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAtt                                  >  2:1079445/1‑100 (MQ=255)
                                                                   ctactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAtt                                  >  2:2312649/1‑100 (MQ=255)
                                                                   ctactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAtt                                  >  2:109351/1‑100 (MQ=255)
                                                                    tactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGATAACGCGTCATTTCGGGCCTACGTTGGACATCTGCCAGCCGTTGGCCCGGCATTg                                 >  2:511626/1‑100 (MQ=255)
                                                                     actactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGc                                >  1:1726257/1‑100 (MQ=255)
                                                                     actactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATCTGCCAGACGTTGGCGCCGCATTGc                                >  1:2205307/1‑100 (MQ=255)
                                                                      ctactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCt                               >  2:1518337/1‑100 (MQ=255)
                                                                      ctactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCt                               >  2:285839/1‑100 (MQ=255)
                                                                      ctactaAGATATACCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCATACGTTGGCGCAGCATTGCt                               >  2:364580/1‑100 (MQ=255)
                                                                       tactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCtt                              >  1:2595427/1‑100 (MQ=255)
                                                                        actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                             >  1:2125524/1‑100 (MQ=255)
                                                                        actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                             >  2:146083/1‑100 (MQ=255)
                                                                         ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                            <  2:1048786/100‑1 (MQ=255)
                                                                         ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                            <  1:2251154/100‑1 (MQ=255)
                                                                         ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                            <  1:2463574/100‑1 (MQ=255)
                                                                          taAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGt                           <  1:2077586/100‑1 (MQ=255)
                                                                           aaGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTc                          >  1:2037830/1‑100 (MQ=255)
                                                                           aaGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTc                          >  2:1707006/1‑100 (MQ=255)
                                                                           aaGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTc                          <  1:2576149/100‑1 (MQ=255)
                                                                           aaGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTc                          <  1:906300/100‑1 (MQ=255)
                                                                            aGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCa                         >  2:2110346/1‑100 (MQ=255)
                                                                             gTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCaa                        <  1:584507/100‑1 (MQ=255)
                                                                             gTTATCCCCTCTTTTGGAGATGGCCCGGTGCGACGCTAAAGCGTCACTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCa                         <  2:807648/99‑1 (MQ=255)
                                                                               tATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAAt                      >  2:1441297/1‑100 (MQ=255)
                                                                                aTCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATc                     >  1:1502842/1‑100 (MQ=255)
                                                                                    ccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCg                 >  1:2276149/1‑100 (MQ=255)
                                                                                        ttttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTc             <  2:1166466/100‑1 (MQ=255)
                                                                                        ttttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTc             <  2:815766/100‑1 (MQ=255)
                                                                                         tttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCg            <  2:1223412/100‑1 (MQ=255)
                                                                                            gTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGttt         <  2:773963/100‑1 (MQ=255)
                                                                                            gTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCAAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGttt         >  2:558894/1‑100 (MQ=255)
                                                                                               gATTGCACGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGATGTTGGCGCAACATTGCTTTGTCAAATCCTCGGTTCGTTTccc      >  2:1934061/1‑100 (MQ=255)
                                                                                                aTTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcccc     <  2:2652220/100‑1 (MQ=255)
                                                                                                aTTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcccc     >  1:1457521/1‑100 (MQ=255)
                                                                                                   GCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGTTTTGTCAAATCCTCGGTTCGTTTCCCcgcg  <  2:98110‑M1/100‑1 (MQ=255)
                                                                                                   GCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcgcg  <  2:2117750‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG  >  NC_000913/3546123‑3546321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.