New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620350NA (NA)5 (0.050) 5/166 NT 100% coding (1159/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620425 0 (0.000)coding (1234/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

GCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGC  >  NC_000913/3620321‑3620448
                             |                                                                                                  
gCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGT                              >  2:2256069‑M2/1‑100 (MQ=255)
 cTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTG                             >  2:2101371‑M2/1‑100 (MQ=255)
  tACCCGTACCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGG                            >  2:2746108‑M2/1‑100 (MQ=255)
  tACACGTATCAGTATGAGAAAGACCGCATCACCATCATCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGG                            <  2:1468333‑M2/100‑1 (MQ=255)
  tACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGG                            <  2:1986700‑M2/100‑1 (MQ=255)
  tACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGG                            <  2:1986664‑M2/100‑1 (MQ=255)
   acacGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGT                           <  2:1153282‑M2/100‑1 (MQ=255)
   acacGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGG                            <  1:2051046‑M2/99‑1 (MQ=255)
    cacGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTG                          <  1:2069392‑M2/100‑1 (MQ=255)
    cacGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTG                          <  2:2561100‑M2/100‑1 (MQ=255)
    cacGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGAGCTGAAGCGGGTGGTG                          <  2:1604289‑M2/100‑1 (MQ=255)
     acGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGA                         >  2:1163477‑M2/1‑100 (MQ=255)
     acGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGA                         <  2:663629‑M2/100‑1 (MQ=255)
      cGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCATGGCGAAGCCGGGCGGAAGCGGGTGGT                           <  1:1194771‑M2/97‑1 (MQ=255)
      cGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTG                          >  2:2070450‑M2/1‑98 (MQ=255)
                          cGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGCGCTGCACACGCAGGGCGAAGCCGCGCTGAAGCGGGTGGTGAtgcggtctttctcatactg      <  2:801532‑M2/98‑20 (MQ=255)
                           gCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGAtgcggtctttctcatactgata   <  1:853038‑M2/100‑23 (MQ=255)
                            catcaccatcacCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGAtgcggtctttctcatactgatac  <  1:872838‑M2/100‑24 (MQ=255)
                             |                                                                                                  
GCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGC  >  NC_000913/3620321‑3620448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.