| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3941521 | 20 (0.200) | 8 (0.090) | 5/168 | NT | 29.8% | intergenic (‑194/‑287) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3941548 | NA (NA) | intergenic (‑221/‑260) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon | |||||
CATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCG > NC_000913/3941422‑3941620 | caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC > 2:2404306‑M1/1‑100 (MQ=255)caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC > 1:2187683‑M1/1‑100 (MQ=255) aTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC > 1:2045964‑M1/1‑99 (MQ=255) tAACGGGTCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTGTAAATTTCCTCTTGTCTGGCCGGAATAACTCCCTTTAATGCGCCACCACTGACACg < 2:2369555/100‑1 (MQ=14) tAACGGCGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGacac < 1:263904/99‑1 (MQ=255) aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg > 1:1472178/1‑100 (MQ=255) aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa < 2:796601/100‑1 (MQ=255) aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa > 1:1465273/1‑100 (MQ=255) aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa > 1:27216/1‑100 (MQ=255) cGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa > 1:1740622/1‑100 (MQ=255) cGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa > 1:1971028/1‑100 (MQ=255) gCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 1:549397/100‑1 (MQ=40) cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg < 2:541428/100‑1 (MQ=40) cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg < 1:621756/100‑1 (MQ=40) ttttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCATCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaacag < 1:1867122/100‑3 (MQ=255) tGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaa > 1:1829629/1‑100 (MQ=35) gCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 1:1023429/1‑100 (MQ=33) cTGAAAAAATGCGCTGTCAGAAAATTCTCTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:2259844/100‑1 (MQ=255) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaan < 1:2519917/100‑2 (MQ=17) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 1:514885/1‑100 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 1:689511/1‑100 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:645873/100‑1 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:633864/100‑1 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 1:405958/1‑100 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 1:235571/100‑1 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 1:2185202/1‑100 (MQ=32) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca < 1:1950552/100‑1 (MQ=31) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca > 2:1147210/1‑100 (MQ=31) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:2037319/1‑100 (MQ=11) cgGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtc < 1:2308402‑M1/100‑31 (MQ=255) aGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtgg < 2:2348481‑M1/100‑36 (MQ=255) aGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtgg < 2:1146343‑M1/100‑36 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:1821881‑M1/100‑39 (MQ=255) aaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATTATGCGCCACCACTGAGccggcggcgtgtttgccgttgttccgtgtcagtggtggc < 1:1177802‑M1/100‑40 (MQ=255) aaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCGCTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggc < 1:2143102‑M1/100‑40 (MQ=255) aaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggc < 2:2144982‑M1/100‑40 (MQ=255) ctctTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtta < 1:1998904‑M1/100‑56 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgac < 1:681587‑M1/100‑96 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgac > 1:1880397‑M1/1‑5 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgac < 1:357004‑M1/100‑96 (MQ=255) cTGACccggcggcgtgtttgccgttgttccgtgccagtggtggcgcattatagagagttattgcggcctgacaagaggacatttaaaataattttctga < 2:1259784‑M1/99‑95 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 2:1000986‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 2:1820973‑M1/100‑98 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 2:1863874‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 1:47984‑M1/1‑3 (MQ=255) gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg < 2:1086660/100‑1 (MQ=31) acacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGc < 2:1106766/100‑1 (MQ=32) aCccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgc > 1:2014663‑M1/1‑2 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:96320‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:1233134‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:2508928‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:1751137‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:116277‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgacc < 2:779524‑M1/97‑97 (MQ=255) cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg > 1:1805398/1‑100 (MQ=32) cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg > 2:744686/1‑100 (MQ=32) cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg > 1:1080394/1‑100 (MQ=32) | CATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCG > NC_000913/3941422‑3941620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |