| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 37 (0.400) | 9/166 | NT | 100% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4040505 | 0 (0.000) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG > NC_000913/4040401‑4040580 | aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 2:1030833‑M2/100‑1 (MQ=255)aaTGAACCGTGAGGCTCAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGGGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 2:1006456‑M2/100‑1 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 1:48000‑M2/1‑100 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 1:160993‑M2/100‑1 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 1:1738324‑M2/100‑1 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 2:563386‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:38638‑M2/100‑1 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG > 1:1618395‑M2/1‑100 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:299949‑M2/100‑1 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 2:827574‑M2/100‑1 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:2451414‑M2/99‑1 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:1477818‑M2/1‑100 (MQ=255) aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATGTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 2:2292859‑M2/100‑1 (MQ=255) agagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatctgctctcatccgccaaaaccgc < 2:4919‑M2/100‑47 (MQ=255) aagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcg < 1:680531‑M2/100‑51 (MQ=255) ttttCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcg > 1:2692498‑M2/1‑46 (MQ=255) ttttCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcg > 1:2695544‑M2/1‑46 (MQ=255) aGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgta > 1:10489‑M2/1‑41 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcct < 1:410369‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct < 1:1754649‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtacggttaagcc < 2:1079054‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc < 2:886195‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGCCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct < 2:351412‑M2/100‑70 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctg < 1:1259907‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctc < 1:914334‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctc < 1:1846703‑M2/100‑71 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcac < 1:2111491‑M2/100‑73 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctca < 1:562367‑M2/100‑73 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 1:2657870‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:830474‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg < 2:1270113‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg < 2:2594269‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:1624810‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctatcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 1:426162‑M2/100‑75 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 1:480317‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 2:2155778‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 1:2590704‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:1133309‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 2:1106607‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcgacgttgtaaggttaagcctca < 2:2665173‑M2/97‑73 (MQ=255) | AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG > NC_000913/4040401‑4040580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |