| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4295947 | NA (NA) | 15 (0.160) | 7/164 | NT | 15.9% | noncoding (113/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4295980 | 86 (0.860) | noncoding (146/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
AGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCG > NC_000913/4295875‑4296046 | aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTA > 1:1660556‑M2/1‑100 (MQ=255)aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTA > 2:831654‑M2/1‑100 (MQ=255)aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTA > 2:1946995‑M2/1‑100 (MQ=255) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCGGCACGCGTCTTAT < 2:1386592‑M2/100‑1 (MQ=255) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC > 1:627825‑M2/1‑100 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAATGCGTGGTGCGACGCTTACCGCGTCTTATC < 2:2401403‑M2/99‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA > 2:191629‑M2/1‑100 (MQ=255) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAG > 1:2332813‑M2/1‑100 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG > 2:1109302‑M2/1‑100 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG > 1:626540‑M2/1‑100 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG > 1:432949‑M2/1‑100 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG > 1:294043‑M2/1‑100 (MQ=255) gcgcAATAGCCTGATTTAGCCTTATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG > 2:916432‑M2/1‑100 (MQ=255) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC < 2:1005152‑M2/100‑1 (MQ=255) aTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATggtcgaggt < 1:1058341‑M2/100‑10 (MQ=255) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCATATCAag < 2:772530‑M2/92‑3 (MQ=255) gCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacg < 1:2392860‑M2/100‑50 (MQ=255) cGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCattgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatca < 1:2231852‑M2/100‑58 (MQ=255) cATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggc < 1:577299‑M2/100‑61 (MQ=255) aTCAACGCCTGATGCGACGCTTAACGCGTCTTAACAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggct < 2:1818248‑M2/100‑62 (MQ=255) tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggcta < 1:69044‑M2/100‑63 (MQ=255) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcg > 1:2069454/1‑100 (MQ=11) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcg < 1:552326/100‑1 (MQ=11) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggccat < 2:2019379‑M2/99‑64 (MQ=255) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctatt < 2:664262‑M2/100‑65 (MQ=255) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcgc < 2:2044431/100‑1 (MQ=31) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcgc < 2:1619947/100‑1 (MQ=31) aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattg < 1:2111596‑M2/100‑66 (MQ=255) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTGGCGTGCGTTTTGAGGGGGGATAGGGCGTTTAcg > 2:385518/1‑98 (MQ=11) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcgcc < 1:989206/100‑1 (MQ=32) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcgcc < 2:1299306/100‑1 (MQ=32) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctatt < 2:2233488‑M2/98‑65 (MQ=255) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcgccg < 2:753942/100‑1 (MQ=32) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAcgccg < 1:2680090/100‑1 (MQ=32) | AGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCG > NC_000913/4295875‑4296046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |