New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4627662 =94 (0.940)6 (0.060) 4/170 NT 6.3% coding (348/1233 nt) nadR trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
?NC_000913 4627688 = 89 (0.930)coding (374/1233 nt) nadR trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
Rejected: Frequency below cutoff threshold.

Only 100 of 121 total aligned reads displayed.

TATCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCG  >  NC_000913/4627563‑4627761
                                                                                                   |                                                                                                   
tccacacatcccagccgtgcggatacggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacg                                                                                                     >  1:2697069‑M1/100‑100 (MQ=255)
tccacacatcccagccgtgcggatacggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacg                                                                                                     <  1:427134‑M1/1‑1 (MQ=255)
tATCCAGCGCGCCTGTAGCCAGGTGTACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCgcag                                                                                                     <  2:1804244/100‑1 (MQ=255)
 ccacacatcccagccgtgcggatacggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacGc                                                                                                    <  1:33369‑M1/2‑1 (MQ=255)
 ccacacatcccagccgtgcggatacggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacGc                                                                                                    <  1:666903‑M1/2‑1 (MQ=255)
 aTCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCgcagc                                                                                                    >  1:772531/1‑100 (MQ=255)
 aTCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCgcagc                                                                                                    >  2:2423592/1‑100 (MQ=255)
  tCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCgcagc                                                                                                    <  2:2267437/99‑1 (MQ=255)
  cacacatcccagccgtgcggatacggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacGCa                                                                                                   >  2:787388‑M1/98‑100 (MQ=255)
   ccAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGcagcag                                                                                                  <  2:527946/100‑1 (MQ=255)
   ccAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGcagcag                                                                                                  <  2:2498726/100‑1 (MQ=255)
   ccAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGcagcag                                                                                                  >  1:949449/1‑100 (MQ=255)
   ccAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGcagcag                                                                                                  >  1:1900596/1‑100 (MQ=255)
        gcgcCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGAc                                                                                             <  2:425013/100‑1 (MQ=255)
        gcgcCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGAc                                                                                             <  1:821259/100‑1 (MQ=255)
         cgcCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGAcc                                                                                            >  2:333858/1‑100 (MQ=255)
             tGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGc                                                                                        <  2:1215262/100‑1 (MQ=255)
             tGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGc                                                                                        <  2:2679595/100‑1 (MQ=255)
              gTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGAGGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTGGAAGCAGCCGACCGTGcc                                                                                       >  2:267524/1‑100 (MQ=255)
                aGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCgg                                                                                     <  1:1605189/100‑1 (MQ=255)
                 gCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGa                                                                                    >  1:1109086/1‑100 (MQ=255)
                 gCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGa                                                                                    >  1:1220380/1‑100 (MQ=255)
                   cAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATc                                                                                  >  2:68968/1‑100 (MQ=255)
                    aGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCg                                                                                 <  1:2210740/100‑1 (MQ=255)
                       ttGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCt                                                                              <  1:333858/100‑1 (MQ=255)
                       ttGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCt                                                                              <  2:1253651/100‑1 (MQ=255)
                        acggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacGCAGCCGACCGTGCCGGATCGTCt                                                                              >  1:705188‑M1/76‑99 (MQ=255)
                         cggctccctgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagttttcaataaccaacGCAGCCGACCGTGCCGGATCGTCTGc                                                                            >  2:1474638‑M1/75‑100 (MQ=255)
                         cggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacGCAGCCGACCGTGCCGGATCGTCTGc                                                                            >  1:2013157‑M1/75‑100 (MQ=255)
                         cggctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaaggttgcaataaccaacGCAGCCGACCGTGCCGGATCGTCTGc                                                                            >  2:2440502‑M1/75‑100 (MQ=255)
                            ctccatgccctcttcgttgaaagcatgaatgcgaatatttttctgatatttaaaagtttgcaataaccaacGCAGCCGACCGTGCCGGATCGTCTGCGt                                                                          >  1:2476057‑M1/72‑99 (MQ=255)
                             aGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTg                                                                        <  1:2585162/100‑1 (MQ=255)
                              gCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTgg                                                                       <  1:2239588/100‑1 (MQ=255)
                                 gCATATCATTATGGGGTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTa                                                                    >  2:1919145/1‑100 (MQ=255)
                                 gCATATCATTATGGGATTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGGGGTGGTTa                                                                    >  2:1673441/1‑100 (MQ=255)
                                 gCATATCAGTAGGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTTCCGGATCGTCTGCGTTGGTTa                                                                    <  1:205570/100‑1 (MQ=255)
                                    tatCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTg                                                                 <  1:2390725/100‑1 (MQ=255)
                                    tatCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGCTGGTTATTg                                                                 >  1:611950/1‑100 (MQ=255)
                                     atCATTATGAGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTgg                                                                       <  2:280566/93‑1 (MQ=255)
                                       cATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCaa                                                              <  2:1510173/100‑1 (MQ=255)
                                        aTTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTCCGTTGGTTATTGCaaa                                                             >  2:1613063/1‑100 (MQ=255)
                                         ttATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAAc                                                            <  1:677419/100‑1 (MQ=255)
                                           aTGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACtt                                                          >  2:745921/1‑100 (MQ=255)
                                            tGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACttt                                                         >  1:1539375/1‑100 (MQ=255)
                                            tGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACttt                                                         >  2:2173549/1‑100 (MQ=255)
                                             gggTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACtttt                                                        <  2:141593/100‑1 (MQ=255)
                                              ggTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTa                                                       <  1:1343948/100‑1 (MQ=255)
                                              ggTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTa                                                       >  2:771187/1‑100 (MQ=255)
                                              ggTTTTGACGATACCCGTGACCGCGCGTTGATCAAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTTCAAACTTTTa                                                       >  2:1812403/1‑100 (MQ=255)
                                                ttttGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTaaa                                                     <  1:1306975/100‑1 (MQ=255)
                                                ttttGACGATACCCGTGACCGCGCGGTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTaaa                                                     <  2:1216595/100‑1 (MQ=255)
                                                    gACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAata                                                   >  2:1617627/1‑98 (MQ=255)
                                                    gACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATc                                                 >  1:1097427/1‑100 (MQ=255)
                                                    gACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATc                                                 <  1:164784/100‑1 (MQ=255)
                                                     aCGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCa                                                <  2:911035/100‑1 (MQ=255)
                                                     aCGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCa                                                <  2:818749/100‑1 (MQ=255)
                                                      cGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAg                                               >  2:884722/1‑100 (MQ=255)
                                                       gATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGa                                              <  1:1210546/100‑1 (MQ=255)
                                                          aCCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGaaaa                                           >  2:402920/1‑100 (MQ=255)
                                                           cccGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGaaaaa                                          >  1:349528/1‑100 (MQ=255)
                                                             cGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAata                                        >  1:1836762/1‑100 (MQ=255)
                                                              gTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAatat                                       <  1:375918/100‑1 (MQ=255)
                                                               tGACCGCGCGTGGTTCGAAGACAGTGCCATGTCGGAGCAGCCGAACTTGTGGAATCGCATGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAatat                                       <  2:1922585/99‑1 (MQ=255)
                                                                 aCCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCg                                    <  1:1721711/100‑1 (MQ=255)
                                                                   cgcgcgTTGTTCGAAGACAGTGCTATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCa                                  <  1:2547516/100‑1 (MQ=255)
                                                                   cgcgcgTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCa                                  <  2:549416/100‑1 (MQ=255)
                                                                   cgcgcgTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCa                                  >  1:564737/1‑100 (MQ=255)
                                                                      gcgTTGTTCGAAGACAGTGTCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTc                               <  1:1070632/100‑1 (MQ=255)
                                                                       cgTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCa                              <  2:2181201/100‑1 (MQ=255)
                                                                       cgTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCa                              <  2:1912935/100‑1 (MQ=255)
                                                                       cgTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCCGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATCCa                              >  1:1227435/1‑100 (MQ=255)
                                                                         ttgttCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATg                            <  2:1481657/100‑1 (MQ=255)
                                                                           gttCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCt                          >  1:1887379/1‑100 (MQ=255)
                                                                           gttCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCt                          >  2:2318763/1‑100 (MQ=255)
                                                                           gttCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCt                          >  1:467961/1‑100 (MQ=255)
                                                                              cGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTc                       <  1:2515032/100‑1 (MQ=255)
                                                                                 aGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAAc                    <  1:381659/100‑1 (MQ=255)
                                                                                 aGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAAc                    <  1:638010/100‑1 (MQ=255)
                                                                                 aGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCAGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAAc                    <  2:676282/100‑1 (MQ=255)
                                                                                  gACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTAGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACg                   >  2:1523709/1‑100 (MQ=255)
                                                                                   gatctGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGa                  <  2:2480496/96‑1 (MQ=255)
                                                                                   aCAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGa                  <  2:982129/100‑1 (MQ=255)
                                                                                    cAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGaa                 >  2:892552/1‑100 (MQ=255)
                                                                                     aGTGGCATGTCGCAGCAGACGACCGTGGCGGATCGTCTGCGTTGGTTATTGCAAAATTTTAAATATCAAAAAAATATTCGCATTCATGCTTTCAACGAag                <  1:1427603/100‑1 (MQ=255)
                                                                                     aGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAag                <  1:2591048/100‑1 (MQ=255)
                                                                                        gCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAagatc             >  1:2480512/1‑98 (MQ=255)
                                                                                        gCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAgg             <  1:1692199/100‑1 (MQ=255)
                                                                                        gCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAgg             >  1:2687228/1‑100 (MQ=255)
                                                                                         ccATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAggg            <  2:1422302/100‑1 (MQ=255)
                                                                                          cATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGc           >  1:737674/1‑100 (MQ=255)
                                                                                          cATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGc           >  1:2161051/1‑100 (MQ=255)
                                                                                            tGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCAt         <  1:2044337/100‑1 (MQ=255)
                                                                                             gTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATg        >  1:853996/1‑100 (MQ=255)
                                                                                                gcagcaGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAg     >  1:1146011/1‑100 (MQ=255)
                                                                                                 cagcagCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGc    <  1:807437/100‑1 (MQ=255)
                                                                                                 cagcagCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGc    <  2:2105160/100‑1 (MQ=255)
                                                                                                  agcagcCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGcc   >  2:1358443/1‑100 (MQ=255)
                                                                                                   GCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAACAATATTCGCATGCATGCTTTCAACGAAGAGCGCATGGAGcc   <  2:770937‑M1/99‑1 (MQ=255)
                                                                                                   GCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCg  >  1:2665994‑M1/1‑100 (MQ=255)
                                                                                                   GCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCg  <  1:753972‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TATCCAGCGCGCCTGTAGCCAGGTTGACGAGCTGCATATCATTATGGGTTTTGACGATACCCGTGACCGCGCGTTGTTCGAAGACAGTGCCATGTCGCAGCAGCCGACCGTGCCGGATCGTCTGCGTTGGTTATTGCAAACTTTTAAATATCAGAAAAATATTCGCATTCATGCTTTCAACGAAGAGGGCATGGAGCCG  >  NC_000913/4627563‑4627761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.